Evidence map›Paper›PMID 26753621›Full record

ArticleMolecular cancer research : MCR2016

Cells Comprising the Prostate Cancer Microenvironment Lack Recurrent Clonal Somatic Genomic Aberrations.

Daniella Bianchi-Frias, Ryan Basom, Jeffrey J Delrow, Ilsa M Coleman, Olga Dakhova, Xiaoyu Qu, Min Fang, Omar E Franco, Nolan G Ericson, Jason H Bielas and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cancer research : MCR, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Epigenetic regulation of cancer-associated fibroblast heterogeneity.Biochimica et biophysica acta. Reviews on cancer · 2023
    Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Role of prostate and bone stromal cells on prostate cancer progression.American journal of clinical and experimental urology · 2022
    Review
  8. Article
  9. Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. Fibroblast Reprogramming in Gastrointestinal Cancer.Frontiers in cell and developmental biology · 2020
    Review
  15. Review
  16. Review
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 1 institution in 1 country.

Daniella Bianchi-FriasDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, Washington. Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington. Division of Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, Washington.
Ryan BasomGenomics and Bioinformatics Shared Resources, Fred Hutchinson Cancer Research Center, Seattle, Washington.
Jeffrey J DelrowGenomics and Bioinformatics Shared Resources, Fred Hutchinson Cancer Research Center, Seattle, Washington.
Ilsa M ColemanDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, Washington. Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington. Division of Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, Washington.
Olga DakhovaDepartment of Pathology and Immunology, Baylor College of Medicine and Michael E. DeBakey Veterans Affairs Medical Center, Houston, Texas, USA.
Xiaoyu QuDivision of Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, Washington.
Min FangDivision of Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, Washington.
Omar E FrancoDepartments of Urologic Surgery and Cancer Biology, Vanderbilt University, Nashville, Tennessee.
Nolan G EricsonDivision of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington.
Jason H BielasDivision of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington.
Simon W HaywardDepartments of Urologic Surgery and Cancer Biology, Vanderbilt University, Nashville, Tennessee.
Lawrence TrueDepartment of Pathology, University of Washington, Seattle, Washington.
Colm MorrisseyDepartment of Urology, University of Washington, Seattle, Washington.
Lisha BrownDepartment of Urology, University of Washington, Seattle, Washington.
Neil A BhowmickSamuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, Los Angeles, California.
David RowleyDepartment of Pathology and Immunology, Baylor College of Medicine and Michael E. DeBakey Veterans Affairs Medical Center, Houston, Texas, USA.
Michael IttmannDepartment of Pathology and Immunology, Baylor College of Medicine and Michael E. DeBakey Veterans Affairs Medical Center, Houston, Texas, USA.
Peter S NelsonDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, Washington. Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington. Division of Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, Washington. Department of Pathology, University of Washington, Seattle, Washington. Department of Urology, University of Washington, Seattle, Washington. Department of Medicine, University of Washington, Seattle, Washington. pnelson@fhcrc.org.
Cape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa · ZA

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Marian Esvelt · 1985 to 2026
$296.4M
Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI DAVID R ROWLEY · 2007 to 2026
$73.9M
TRANSCRIPTOME AND PROTEOME STRATIFICATION OF PROSTATE ADENOCARCINOMA PHENOTYPESP50CA097186 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI John Kyung Lee · 2002 to 2026
$58.1M
Tissue and Pathology CoreU54CA126540 · NCI · UNIVERSITY OF WASHINGTON · PI VESSELLA, ROBERT LOUIS · 2006 to 2010
$3.3M
Influences of the Microenvironment on Cancer Stem CellsU01CA164188 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI NELSON, PETER S, WITTE, OWEN N. · 2011 to 2015
$2.9M
TGFB Signals in Prostate Stromal-Epithelial InteractionsR01CA108646 · NCI · VANDERBILT UNIVERSITY · PI BHOWMICK, NEIL A. · 2004 to 2016
$2.9M
Resistance to Cancer Therapeutics Through Microenvironment Damage Responses.R01CA165573 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI NELSON, PETER S · 2012 to 2016
$1.8M
Paracrine Mechanisms of Prostate Cancer Metastatic ProgressionI01BX001040 · VA · VETERANS HEALTH ADMINISTRATION · PI BHOWMICK, NEIL A. · 2013 to 2020
–
BLRD VA I01 BX001040NCI NIH HHS CA097186NCI NIH HHS P30 CA015704NCI NIH HHS P30CA015704-40NCI NIH HHS P30 CA125123NCI NIH HHS P30CA125123NCI NIH HHS P50 CA097186NCI NIH HHS R01 CA108646NCI NIH HHS R01 CA165573NCI NIH HHS R01CA165573NCI NIH HHS U01 CA164188NCI NIH HHS U01CA164188NCI NIH HHS U54 CA126540NCI NIH HHS U54CA126540
6 · The paper itself

Abstract

unlabelledProstate cancer-associated stroma (CAS) plays an active role in malignant transformation, tumor progression, and metastasis. Molecular analyses of CAS have demonstrated significant changes in gene expression; however, conflicting evidence exists on whether genomic alterations in benign cells comprising the tumor microenvironment (TME) underlie gene expression changes and oncogenic phenotypes. This study evaluates the nuclear and mitochondrial DNA integrity of prostate carcinoma cells, CAS, matched benign epithelium and benign epithelium-associated stroma by whole-genome copy-number analyses, targeted sequencing of TP53, and FISH. Array comparative genomic hybridization (aCGH) of CAS revealed a copy-neutral diploid genome with only rare and small somatic copy-number aberrations (SCNA). In contrast, several expected recurrent SCNAs were evident in the adjacent prostate carcinoma cells, including gains at 3q, 7p, and 8q, and losses at 8p and 10q. No somatic TP53 mutations were observed in CAS. Mitochondrial DNA (mtDNA) extracted from carcinoma cells and stroma identified 23 somatic mtDNA mutations in neoplastic epithelial cells, but only one mutation in stroma. Finally, genomic analyses identified no SCNAs, LOH, or copy-neutral LOH in cultured cancer-associated fibroblasts, which are known to promote prostate cancer progression in vivo IMPLICATIONS: The gene expression changes observed in prostate cancer-adjacent stroma and the attendant contribution of the stroma to the development and progression of prostate cancer are not due to frequent or recurrent genomic alterations in the TME.

Indexed as

Chromosome AberrationsChromosomes, HumanComparative Genomic HybridizationDNA, MitochondrialGene Expression Regulation, NeoplasticHumansMaleProstatic NeoplasmsTumor MicroenvironmentTumor Suppressor Protein p53DNA, MitochondrialTP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID26753621
PMCPMC5582956
OpenAlexW2232169391

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.