Evidence map›Paper›PMID 26752355›Full record

ArticleAnalytical chemistry2016

Study of Small-Molecule-Membrane Protein Binding Kinetics with Nanodisc and Charge-Sensitive Optical Detection.

Guangzhong Ma, Yan Guan, Shaopeng Wang, Han Xu, Nongjian Tao

Abstract read
In one paragraph

Article in Analytical chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Guangzhong MaDepartment of Chemistry and Biochemistry, Arizona State University , Tempe, Arizona 85281, United States.
Yan Guan
Shaopeng Wang
Han XuTherapeutic Discovery, Amgen Incorporated , Thousand Oaks, California 91320, United States.
Nongjian TaoDepartment of Chemistry and Biochemistry, Arizona State University , Tempe, Arizona 85281, United States.
Arizona State University · USAmgen (United States) · USBioElectronics (United States) · US

Funding

Charge sensitive optical detection for high throughput study of small moleculesR21CA173205 · NCI · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI TAO, NONGJIAN · 2012 to 2014
$643k
NCI NIH HHS 1R21CA173205NCI NIH HHS R21 CA173205
6 · The paper itself

Abstract

Nanodisc technology provides membrane proteins with a nativelike lipid bilayer and much-needed solubility and enables in vitro quantification of membrane protein binding with ligands. However, it has been a challenge to measure interaction between small-molecule ligands and nanodisc-encapsulated membrane proteins, because the responses of traditional mass-based detection methods scale with the mass of the ligands. We have developed a charge-sensitive optical detection (CSOD) method for label-free measurement of the binding kinetics of low molecular mass ligands with nanodisc-encapsulated membrane proteins. This microplate-compatible method is sensitive to the charge instead of the mass of a ligand and is able to measure both large and small molecules in a potentially high-throughput format. Using CSOD, we measured the binding kinetics between peptide and small-molecule ligands and a nanodisc-encapsulated potassium ion channel protein, KcsA-Kv1.3. Both association and dissociation rate constants for these ligands are obtained for the first time. The CSOD results were validated by the consistency of the values with reported binding affinities. In addition, we found that CSOD can tolerate up to 3.9% dimethyl sulfoxide (DMSO) and up to 10% serum, which shows its compatibility with realistic sample conditions.

Indexed as

AnimalsBinding SitesHorsesKineticsKv1.3 Potassium ChannelLigandsNanostructuresOptics and PhotonicsProtein BindingSmall Molecule LibrariesKv1.3 Potassium ChannelLigandsSmall Molecule Libraries

Identifiers

PMID26752355
PMCPMC5181645
OpenAlexW2238345106

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.