Evidence map›Paper›PMID 26750477›Full record

ArticleActa crystallographica. Section F, Structural biology communications2016

Cloning, expression, purification, crystallization and X-ray diffraction analysis of dihydrodipicolinate synthase from the human pathogenic bacterium Bartonella henselae strain Houston-1 at 2.1 Å resolution.

Kubra F Naqvi, Bart L Staker, Renwick C J Dobson, Dmitry Serbzhinskiy, Banumathi Sankaran, Peter J Myler, André O Hudson

Open access · greenAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 6 institutions in 2 countries.

Kubra F NaqviThomas H. Gosnell School of Life Sciences, Rochester Institute of Technology, 85 Lomb Memorial Drive, Rochester, NY 14623-5603, USA.
Bart L StakerSeattle Structural Genomics Center for Infectious Disease, USA.
Renwick C J DobsonBiomolecular Interaction Centre, School of Biological Sciences, University of Canterbury, Private Bag 4800, Christchurch, New Zealand.
Dmitry SerbzhinskiySeattle Structural Genomics Center for Infectious Disease, USA.
Banumathi SankaranBerkeley Center for Structural Biology, Ernest Orlando Lawrence Berkeley National Laboratory, USA.
Peter J MylerSeattle Structural Genomics Center for Infectious Disease, USA.
André O HudsonThomas H. Gosnell School of Life Sciences, Rochester Institute of Technology, 85 Lomb Memorial Drive, Rochester, NY 14623-5603, USA.
Rochester Institute of Technology · USCenter for Infectious Disease Research · USInfectious Disease Research Institute · USJoint Center for Structural Genomics · USLawrence Berkeley National Laboratory · USUniversity of Canterbury · NZ

Funding

NIAID NIH HHS HHSN272200700057CNIAID NIH HHS HHSN272201200025C
6 · The paper itself

Abstract

The enzyme dihydrodipicolinate synthase catalyzes the committed step in the synthesis of diaminopimelate and lysine to facilitate peptidoglycan and protein synthesis. Dihydrodipicolinate synthase catalyzes the condensation of L-aspartate 4-semialdehyde and pyruvate to synthesize L-2,3-dihydrodipicolinate. Here, the cloning, expression, purification, crystallization and X-ray diffraction analysis of dihydrodipicolinate synthase from the pathogenic bacterium Bartonella henselae, the causative bacterium of cat-scratch disease, are presented. Protein crystals were grown in conditions consisting of 20%(w/v) PEG 4000, 100 mM sodium citrate tribasic pH 5.5 and were shown to diffract to ∼2.10 Å resolution. They belonged to space group P212121, with unit-cell parameters a = 79.96, b = 106.33, c = 136.25 Å. The final R values were Rr.i.m. = 0.098, Rwork = 0.183, Rfree = 0.233.

Indexed as

Amino Acid SequenceBacterial ProteinsBartonella henselaeCatalytic DomainChromatography, GelCloning, MolecularCrystallizationCrystallography, X-RayEscherichia coliGene ExpressionHydro-LyasesModels, MolecularMolecular Sequence DataProtein Conformation, alpha-HelicalProtein Structure, Quaternary4-hydroxy-tetrahydrodipicolinate synthaseBacterial ProteinsHydro-LyasesBartonella henselaecat-scratch diseasediaminopimelatedihydrodipicolinate synthaselysine biosynthesis

Identifiers

PMID26750477
PMCPMC4708043
OpenAlexW2339318341

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.