Evidence map›Paper›PMID 26750147›Full record

ArticleScientific reports2016

Selective pressure against horizontally acquired prokaryotic genes as a driving force of plastid evolution.

Briardo Llorente, Flavio S J de Souza, Gabriela Soto, Cristian Meyer, Guillermo D Alonso, Mirtha M Flawiá, Fernando Bravo-Almonacid, Nicolás D Ayub, Manuel Rodríguez-Concepción

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Accepting Foreign Genes.Journal of molecular evolution · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Briardo LlorenteCentre for Research in Agricultural Genomics (CRAG) CSIC-IRTA-UAB-UB, 08193 Barcelona, Spain.
Flavio S J de SouzaInstituto de Investigaciones en Ingeniería Genética y Biología Molecular Dr. Héctor Torres, Consejo Nacional de Investigaciones Científicas y Técnicas (INGEBI-CONICET), C1428ADN Buenos Aires, Argentina.
Gabriela SotoInstituto de Investigaciones en Ingeniería Genética y Biología Molecular Dr. Héctor Torres, Consejo Nacional de Investigaciones Científicas y Técnicas (INGEBI-CONICET), C1428ADN Buenos Aires, Argentina.
Cristian MeyerInstituto de Investigaciones en Ingeniería Genética y Biología Molecular Dr. Héctor Torres, Consejo Nacional de Investigaciones Científicas y Técnicas (INGEBI-CONICET), C1428ADN Buenos Aires, Argentina.
Guillermo D AlonsoInstituto de Investigaciones en Ingeniería Genética y Biología Molecular Dr. Héctor Torres, Consejo Nacional de Investigaciones Científicas y Técnicas (INGEBI-CONICET), C1428ADN Buenos Aires, Argentina.
Mirtha M FlawiáInstituto de Investigaciones en Ingeniería Genética y Biología Molecular Dr. Héctor Torres, Consejo Nacional de Investigaciones Científicas y Técnicas (INGEBI-CONICET), C1428ADN Buenos Aires, Argentina.
Fernando Bravo-AlmonacidInstituto de Investigaciones en Ingeniería Genética y Biología Molecular Dr. Héctor Torres, Consejo Nacional de Investigaciones Científicas y Técnicas (INGEBI-CONICET), C1428ADN Buenos Aires, Argentina.
Nicolás D AyubInstituto de Genética Ewald A. Favret, Centro de Investigación en Ciencias Veterinarias y Agronómicas, Instituto Nacional de Tecnología Agropecuaria (CICVyA-INTA), B1712WAA Castelar, Argentina.
Manuel Rodríguez-ConcepciónCentre for Research in Agricultural Genomics (CRAG) CSIC-IRTA-UAB-UB, 08193 Barcelona, Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The plastid organelle comprises a high proportion of nucleus-encoded proteins that were acquired from different prokaryotic donors via independent horizontal gene transfers following its primary endosymbiotic origin. What forces drove the targeting of these alien proteins to the plastid remains an unresolved evolutionary question. To better understand this process we screened for suitable candidate proteins to recapitulate their prokaryote-to-eukaryote transition. Here we identify the ancient horizontal transfer of a bacterial polyphenol oxidase (PPO) gene to the nuclear genome of an early land plant ancestor and infer the possible mechanism behind the plastidial localization of the encoded enzyme. Arabidopsis plants expressing PPO versions either lacking or harbouring a plastid-targeting signal allowed examining fitness consequences associated with its subcellular localization. Markedly, a deleterious effect on plant growth was highly correlated with PPO activity only when producing the non-targeted enzyme, suggesting that selection favoured the fixation of plastid-targeted protein versions. Our results reveal a possible evolutionary mechanism of how selection against heterologous genes encoding cytosolic proteins contributed in incrementing plastid proteome complexity from non-endosymbiotic gene sources, a process that may also impact mitochondrial evolution.

Indexed as

Biological EvolutionGene Transfer, HorizontalGenome, PlantArabidopsisBacteriaCatechol OxidaseCell NucleusChlorophytaEukaryotic CellsFungiGene ExpressionModels, MolecularPhylogenyPlastidsProkaryotic CellsProtein Sorting SignalsCatechol OxidaseProtein Sorting Signals

Identifiers

PMID26750147
PMCPMC4707469

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.