Evidence map›Paper›PMID 26749561›Full record

ArticleMicrobiologyOpen2016

Microvirga massiliensis sp. nov., the human commensal with the largest genome.

Aurélia Caputo, Jean-Christophe Lagier, Saïd Azza, Catherine Robert, Donia Mouelhi, Pierre-Edouard Fournier, Didier Raoult

Expression of concernOpen access · goldAbstract read
In one paragraph

Article in MicrobiologyOpen, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It carries an expression of concern. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 28 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Microorganisms · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Draft genome and description ofNew microbes and new infections · 2021
    Article
  9. Article
  10. Isolation and Identification ofMicroorganisms · 2020
    Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 1 institution in 2 countries.

Aurélia CaputoUnité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes, CNRS, UMR 7278 - IRD 198, Faculté de médecine, Aix-Marseille Université, 27 Boulevard Jean Moulin, 13385, Marseille Cedex 05, France.
Jean-Christophe LagierUnité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes, CNRS, UMR 7278 - IRD 198, Faculté de médecine, Aix-Marseille Université, 27 Boulevard Jean Moulin, 13385, Marseille Cedex 05, France.
Saïd AzzaUnité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes, CNRS, UMR 7278 - IRD 198, Faculté de médecine, Aix-Marseille Université, 27 Boulevard Jean Moulin, 13385, Marseille Cedex 05, France.
Catherine RobertUnité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes, CNRS, UMR 7278 - IRD 198, Faculté de médecine, Aix-Marseille Université, 27 Boulevard Jean Moulin, 13385, Marseille Cedex 05, France.
Donia MouelhiUnité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes, CNRS, UMR 7278 - IRD 198, Faculté de médecine, Aix-Marseille Université, 27 Boulevard Jean Moulin, 13385, Marseille Cedex 05, France.
Pierre-Edouard FournierUnité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes, CNRS, UMR 7278 - IRD 198, Faculté de médecine, Aix-Marseille Université, 27 Boulevard Jean Moulin, 13385, Marseille Cedex 05, France.
Didier RaoultUnité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes, CNRS, UMR 7278 - IRD 198, Faculté de médecine, Aix-Marseille Université, 27 Boulevard Jean Moulin, 13385, Marseille Cedex 05, France.
Centre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microvirga massiliensis sp. nov. strain JC119(T) is a bacteria isolated in Marseille from a stool sample collected in Senegal. The 16S rRNA (JF824802) of M. massiliensis JC119(T) revealed 95% sequence identity with Microvirga lotononidis WSM3557(T) (HM362432). This bacterium is aerobic, gram negative, catalase positive, and oxidase negative. The draft genome of M. massiliensis JC119(T) comprises a 9,207,211-bp-long genome that is the largest bacterial genome of an isolate in humans. The genome exhibits a G+C content of 63.28% and contains 8685 protein-coding genes and 77 RNA genes, including 21 rRNA genes. Here, we describe the features of M. massiliensis JC119(T), together with the genome sequence information and its annotation.

Indexed as

Genome, BacterialGenomicsAdolescentAlphaproteobacteriaBacterial Typing TechniquesComputational BiologyFranceGastrointestinal MicrobiomeHumansMaleMetagenomeMetagenomicsMolecular Sequence AnnotationPhenotypePhylogenySequence Analysis, DNACulturomicslarge genomeMicrovirga massiliensistaxonogenomics

Identifiers

PMID26749561
PMCPMC4831475
OpenAlexW2233269417

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.