Evidence map›Paper›PMID 26748395›Full record

ArticleJournal of experimental botany2016

The Arabidopsis tonoplast is almost devoid of glycoproteins with complex N-glycans, unlike the rat lysosomal membrane.

Emanuela Pedrazzini, Andrea Caprera, Ilaria Fojadelli, Alessandra Stella, Alessandra Rocchetti, Barbara Bassin, Enrico Martinoia, Alessandro Vitale

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
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  3. Glycosylation Analysis of Feline Small Intestine FollowingAnimals : an open access journal from MDPI · 2022
    Article
  4. Review
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  12. Experimental botany in 2017.Journal of experimental botany · 2017
    Article
  13. The tonoplast--where sweetness is dispensable.Journal of experimental botany · 2016
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Emanuela PedrazziniIstituto di Biologia e Biotecnologia Agraria, CNR, Milano, Italy pedrazzini@ibba.cnr.it.
Andrea CapreraParco Tecnologico Padano, Lodi, Italy.
Ilaria FojadelliParco Tecnologico Padano, Lodi, Italy.
Alessandra StellaIstituto di Biologia e Biotecnologia Agraria, CNR, Milano, Italy.
Alessandra RocchettiIstituto di Biologia e Biotecnologia Agraria, CNR, Milano, Italy.
Barbara BassinInstitute of Plant Biology, University of Zurich, Zurich, Switzerland.
Enrico MartinoiaInstitute of Plant Biology, University of Zurich, Zurich, Switzerland.
Alessandro VitaleIstituto di Biologia e Biotecnologia Agraria, CNR, Milano, Italy.
Istituto di Biologia e Biotecnologia Agraria · ITParco Tecnologico Padano · ITUniversity of Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The distribution of the N-glycoproteome in integral membrane proteins of the vacuolar membrane (tonoplast) or the plasma membrane of Arabidopsis thaliana and, for further comparison, of the Rattus norvegicus lysosomal and plasma membranes, was analyzed. In silico analysis showed that potential N-glycosylation sites are much less frequent in tonoplast proteins. Biochemical analysis of Arabidopsis subcellular fractions with the lectin concanavalin A, which recognizes mainly unmodified N-glycans, or with antiserum against Golgi-modified N-glycans confirmed the in silico results and showed that, unlike the plant plasma membrane, the tonoplast is almost or totally devoid of N-glycoproteins with Golgi-modified glycans. Lysosomes share with vacuoles the hydrolytic functions and the position along the secretory pathway; however, our results indicate that their membranes had a divergent evolution. We propose that protection against the luminal hydrolases that are abundant in inner hydrolytic compartments, which seems to have been achieved in many lysosomal membrane proteins by extensive N-glycosylation of the luminal domains, has instead been obtained in the vast majority of tonoplast proteins by limiting the length of such domains.

Indexed as

AnimalsArabidopsisArabidopsis ProteinsCell MembraneComputer SimulationEndoplasmic ReticulumGlycoproteinsGlycosylationIntracellular MembranesLysosomesMembrane ProteinsMicrosomesOligosaccharidesPeptidesPolysaccharidesProteomeArabidopsis ProteinsGlycoproteinsMembrane ProteinsOligosaccharidesPeptidesPolysaccharidesProteomeAsparagine-linked oligosaccharidescell evolutionglycoproteinsintegral membrane proteinslysosomeplant vacuoletonoplast.

Identifiers

PMID26748395
PMCPMC4783361
OpenAlexW2251769667

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.