Evidence map›Paper›PMID 26747863›Full record

ArticleJournal of medical genetics2016

Chromosomal microarray testing identifies a 4p terminal region associated with seizures in Wolf-Hirschhorn syndrome.

Karen S Ho, Sarah T South, Amanda Lortz, Charles H Hensel, Mallory R Sdano, Rena J Vanzo, Megan M Martin, Andreas Peiffer, Christophe G Lambert, Amy Calhoun and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of medical genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
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  6. Review
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  8. Article
  9. De novo truncating variants in WHSC1 recapitulate the Wolf-Hirschhorn (4p16.3 microdeletion) syndrome phenotype.Genetics in medicine : official journal of the American College of Medical Genetics · 2019
    Article
  10. The Many Faces ofFrontiers in physiology · 2019
    Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. A case for cannabidiol in Wolf-Hirschhorn syndrome seizure management.American journal of medical genetics. Part A · 2017
    Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Karen S HoLineagen, Inc., Salt Lake City, Utah, USA.ORCID http://orcid.org/0000-0003-3217-354X
Sarah T SouthARUP Laboratories, Salt Lake City, Utah, USA Department of Pathology, University of Utah, Salt Lake City, Utah, USA.
Amanda Lortz4p- Support Group, Sunbury, Ohio, USA.
Charles H HenselLineagen, Inc., Salt Lake City, Utah, USA.
Mallory R SdanoLineagen, Inc., Salt Lake City, Utah, USA.
Rena J VanzoLineagen, Inc., Salt Lake City, Utah, USA.
Megan M MartinLineagen, Inc., Salt Lake City, Utah, USA.
Andreas PeifferDepartment of Pediatrics, University of Utah, Salt Lake City, Utah, USA.
Christophe G LambertDepartment of Internal Medicine, University of New Mexico, Albuquerque, New Mexico, USA.
Amy CalhounDepartment of Pediatrics, University of Minnesota, Minneapolis, Minnesota, USA.
John C CareyDepartment of Pediatrics, University of Utah, Salt Lake City, Utah, USA.
Agatino BattagliaStella Maris Clinical Research Institute for Child and Adolescent Neuropsychiatry, Pisa, Italy.
Lineage Cell Therapeutics (United States) · USUniversity of Utah · USFondazione Stella Maris · ITUniversity of Minnesota · USUniversity of New Mexico · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundWolf-Hirschhorn syndrome (WHS) is a contiguous gene deletion syndrome involving variable size deletions of the 4p16.3 region. Seizures are frequently, but not always, associated with WHS. We hypothesised that the size and location of the deleted region may correlate with seizure presentation.

methodsUsing chromosomal microarray analysis, we finely mapped the breakpoints of copy number variants (CNVs) in 48 individuals with WHS. Seizure phenotype data were collected through parent-reported answers to a comprehensive questionnaire and supplemented with available medical records.

resultsWe observed a significant correlation between the presence of an interstitial 4p deletion and lack of a seizure phenotype (Fisher's exact test p=3.59e-6). In our cohort, there were five individuals with interstitial deletions with a distal breakpoint at least 751 kbp proximal to the 4p terminus. Four of these individuals have never had an observable seizure, and the fifth individual had a single febrile seizure at the age of 1.5 years. All other individuals in our cohort whose deletions encompass the terminal 751 kbp region report having seizures typical of WHS. Additional examples from the literature corroborate these observations and further refine the candidate seizure susceptibility region to a region 197 kbp in size, starting 368 kbp from the terminus of chromosome 4.

conclusionsWe identify a small terminal region of chromosome 4p that represents a seizure susceptibility region. Deletion of this region in the context of WHS is sufficient for seizure occurrence.

Indexed as

AdolescentAdultChildChild, PreschoolChromosome DeletionChromosomes, Human, Pair 4DNA Copy Number VariationsEpilepsyFemaleHumansInfantIn Situ Hybridization, FluorescenceMaleMicroarray AnalysisSeizuresWolf-Hirschhorn SyndromeClinical geneticsEpilepsy and seizuresMicroarrayNeurology

Identifiers

PMID26747863
PMCPMC4819617
OpenAlexW2267294361

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.