Evidence map›Paper›PMID 26747285›Full record

ArticlePlant physiology2016

Affinity Purification and Characterization of Functional Tubulin from Cell Suspension Cultures of Arabidopsis and Tobacco.

Takashi Hotta, Satoshi Fujita, Seiichi Uchimura, Masahiro Noguchi, Taku Demura, Etsuko Muto, Takashi Hashimoto

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.1field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 35 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Takashi HottaGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (T.Ho., S.F., M.N., T.D., T.Ha.); andLaboratory of Molecular Biophysics, RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan (S.U., E.M.).ORCID http://orcid.org/0000-0002-9497-0950
Satoshi FujitaGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (T.Ho., S.F., M.N., T.D., T.Ha.); andLaboratory of Molecular Biophysics, RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan (S.U., E.M.).
Seiichi UchimuraGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (T.Ho., S.F., M.N., T.D., T.Ha.); andLaboratory of Molecular Biophysics, RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan (S.U., E.M.).
Masahiro NoguchiGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (T.Ho., S.F., M.N., T.D., T.Ha.); andLaboratory of Molecular Biophysics, RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan (S.U., E.M.).
Taku DemuraGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (T.Ho., S.F., M.N., T.D., T.Ha.); andLaboratory of Molecular Biophysics, RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan (S.U., E.M.).
Etsuko MutoGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (T.Ho., S.F., M.N., T.D., T.Ha.); andLaboratory of Molecular Biophysics, RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan (S.U., E.M.).ORCID http://orcid.org/0000-0001-5812-1436
Takashi HashimotoGraduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara 630-0192, Japan (T.Ho., S.F., M.N., T.D., T.Ha.); andLaboratory of Molecular Biophysics, RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan (S.U., E.M.) hasimoto@bs.naist.jp.ORCID http://orcid.org/0000-0002-8398-5479
Nara Institute of Science and Technology · JPRIKEN Center for Brain Science · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microtubules assemble into several distinct arrays that play important roles in cell division and cell morphogenesis. To decipher the mechanisms that regulate the dynamics and organization of this versatile cytoskeletal component, it is essential to establish in vitro assays that use functional tubulin. Although plant tubulin has been purified previously from protoplasts by reversible taxol-induced polymerization, a simple and efficient purification method has yet to be developed. Here, we used a Tumor Overexpressed Gene (TOG) column, in which the tubulin-binding domains of a yeast (Saccharomyces cerevisiae) TOG homolog are immobilized on resin, to isolate functional plant tubulin. We found that several hundred micrograms of pure tubulin can readily be purified from cell suspension cultures of tobacco (Nicotiana tabacum) and Arabidopsis (Arabidopsis thaliana). The tubulin purified by the TOG column showed high assembly competence, partly because of low levels of polymerization-inhibitory phosphorylation of α-tubulin. Compared with porcine brain tubulin, Arabidopsis tubulin is highly dynamic in vitro at both the plus and minus ends, exhibiting faster shrinkage rates and more frequent catastrophe events, and exhibits frequent spontaneous nucleation. Furthermore, our study shows that an internal histidine tag in α-tubulin can be used to prepare particular isotypes and specifically engineered versions of α-tubulin. In contrast to previous studies of plant tubulin, our mass spectrometry and immunoblot analyses failed to detect posttranslational modification of the isolated Arabidopsis tubulin or detected only low levels of posttranslational modification. This novel technology can be used to prepare assembly-competent, highly dynamic pure tubulin from plant cell cultures.

Indexed as

AnimalsArabidopsisBrainCell Culture TechniquesCells, CulturedChromatography, AffinityMicrotubule-Associated ProteinsMicrotubulesNicotianaPhosphorylationPlant ProteinsProtein BindingProtein DomainsProtein Processing, Post-TranslationalProtoplastsSaccharomyces cerevisiaeMicrotubule-Associated ProteinsPlant ProteinsSaccharomyces cerevisiae ProteinsSTU2 protein, S cerevisiaeSuspensionsThreonineTubulin

Identifiers

PMID26747285
PMCPMC4775104
OpenAlexW2401720353

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.