Evidence map›Paper›PMID 26746808›Full record

ArticleJournal of inorganic biochemistry2016

Heme-bound SiaA from Streptococcus pyogenes: Effects of mutations and oxidation state on protein stability.

Neval Akbas, Elizabeth B Draganova, Darci R Block, Brian R Sook, Yau Fong Chan, Joy Zhuo, Zehava Eichenbaum, Kenton R Rodgers, Dabney W Dixon

Open access · greenAbstract read
In one paragraph

Article in Journal of inorganic biochemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.7field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. The Shr receptor fromProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  2. Corynebacterium diphtheriae HmuT: dissecting the roles of conserved residues in heme pocket stabilization.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Neval AkbasDepartment of Chemistry, Georgia State University, Atlanta, GA 30302-3965, USA.
Elizabeth B DraganovaDepartment of Chemistry, Georgia State University, Atlanta, GA 30302-3965, USA.
Darci R BlockDepartment of Chemistry and Biochemistry, North Dakota State University, Fargo, ND 58108-6050, USA.
Brian R SookDepartment of Chemistry, Georgia State University, Atlanta, GA 30302-3965, USA.
Yau Fong ChanDepartment of Chemistry, Georgia State University, Atlanta, GA 30302-3965, USA.
Joy ZhuoDepartment of Chemistry, Georgia State University, Atlanta, GA 30302-3965, USA.
Zehava EichenbaumDepartment of Biology, Georgia State University, Atlanta, GA 30303, USA.
Kenton R RodgersDepartment of Chemistry and Biochemistry, North Dakota State University, Fargo, ND 58108-6050, USA.
Dabney W DixonDepartment of Chemistry, Georgia State University, Atlanta, GA 30302-3965, USA. Electronic address: ddixon@gsu.edu.
Georgia State University · USNorth Dakota State University · US

Funding

Iron Acquisition From Host Proteins in S. pyogenesR01AI057877 · NIAID · GEORGIA STATE UNIVERSITY · PI EICHENBAUM, ZEHAVA · 2004 to 2008
$1.1M
Study of heme uptake and transport proteins from P. aerugenosa and S. dysenteriaeR15AI072719 · NIAID · NORTH DAKOTA STATE UNIVERSITY · PI RODGERS, KENTON · 2007 to 2011
$707k
NIAID NIH HHS R01 AI057877NIAID NIH HHS R15 AI072719
6 · The paper itself

Abstract

The protein SiaA (HtsA) is part of a heme uptake pathway in Streptococcus pyogenes. In this report, we present the heme binding of the alanine mutants of the axial histidine (H229A) and methionine (M79A) ligands, as well as a lysine (K61A) and cysteine (C58A) located near the heme propionates (based on homology modeling) and a control mutant (C47A). pH titrations gave pKa values ranging from 9.0 to 9.5, close to the value of 9.7 for WT SiaA. Resonance Raman spectra of the mutants suggested that the ferric heme environment may be distinct from the wild-type; spectra of the ferrous states were similar. The midpoint reduction potential of the K61A mutant was determined by spectroelectrochemical titration to be 61±3mV vs. SHE, similar to the wild-type protein (68±3mV). The addition of guanidine hydrochloride showed two processes for protein denaturation, consistent with heme loss from protein forms differing by the orientation of the heme in the binding pocket (the half-life for the slower process ranged from less than half a day to two days). The ease of protein unfolding was related to the strength of interaction of the residues with the heme. We hypothesize that kinetically facile but only partial unfolding, followed by a very slow approach to the completely unfolded state, may be a fundamental attribute of heme trafficking proteins. Small motions to release/transfer the heme accompanied by resistance to extensive unfolding may preserve the three dimensional form of the protein for further uptake and release.

Indexed as

Bacterial Outer Membrane ProteinsFerric CompoundsFerrous CompoundsHemeHydrogen-Ion ConcentrationKineticsOxidation-ReductionProtein FoldingProtein StabilityThermodynamicsBacterial Outer Membrane ProteinsFerric CompoundsFerrous CompoundsHemeSiaA protein, Streptococcus pyogenesDenaturationGuanidineHemeKineticsResonance RamanStreptococcus pyogenesunfoldingUptake

Identifiers

PMID26746808
PMCPMC4943329
OpenAlexW2176771033

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.