Evidence map›Paper›PMID 26746357›Full record

ArticleNeuroscience2016

Calcium regulation of HCN channels supports persistent activity in a multiscale model of neocortex.

S A Neymotin, R A McDougal, A S Bulanova, M Zeki, P Lakatos, D Terman, M L Hines, W W Lytton

Open access · hybridAbstract read
In one paragraph

Article in Neuroscience, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 43 citations in OpenAlex.

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  9. An uncommon neuronal class conveys visual signals from rods and cones to retinal ganglion cells.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  10. Review
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  13. The what, where and how of delay activity.Nature reviews. Neuroscience · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

S A NeymotinDepartment of Physiology & Pharmacology, SUNY Downstate, 450 Clarkson Avenue, Brooklyn, NY 11203, USA; Department of Neuroscience, Yale University School of Medicine, 333 Cedar Street, New Haven, CT 06510, USA. Electronic address: samn@neurosim.downstate.edu.
R A McDougalDepartment of Neuroscience, Yale University School of Medicine, 333 Cedar Street, New Haven, CT 06510, USA. Electronic address: robert.mcdougal@yale.edu.
A S BulanovaDepartment of Physiology & Pharmacology, SUNY Downstate, 450 Clarkson Avenue, Brooklyn, NY 11203, USA; Department of Neuroscience, Yale University School of Medicine, 333 Cedar Street, New Haven, CT 06510, USA. Electronic address: anna.bulanova@downstate.edu.
M ZekiDepartment of Mathematics, Zirve University, 27260 Gaziantep, Turkey. Electronic address: zeki.mustafa@gmail.com.
P LakatosNathan Kline Institute for Psychiatric Research, 140 Old Orangeburg Road, Orangeburg, NY 10962, USA. Electronic address: PLakatos@nki.rfmh.org.
D TermanDepartment of Mathematics, The Ohio State University, 231 W 18th Avenue, Columbus, OH 43210, USA. Electronic address: terman@math.osu.edu.
M L HinesDepartment of Neuroscience, Yale University School of Medicine, 333 Cedar Street, New Haven, CT 06510, USA. Electronic address: michael.hines@yale.edu.
W W LyttonDepartment of Physiology & Pharmacology, SUNY Downstate, 450 Clarkson Avenue, Brooklyn, NY 11203, USA; Department of Neurology, SUNY Downstate, 450 Clarkson Avenue, Brooklyn, NY 11203, USA; Department Neurology, Kings County Hospital Center, 451 Clarkson Avenue, Brooklyn, NY 11203, USA. Electronic address: billl@neurosim.downstate.edu.
Yale University · USKings County Hospital Center · USNathan Kline Institute for Psychiatric Research · USThe Ohio State University · USZirve University · TR

Funding

MEDICAL INFORMATICS RESEARCH TRAINING AT YALET15LM007056 · NLM · YALE UNIVERSITY · PI Mark Bender Gerstein, LUCILA OHNO-MACHADO · 1987 to 2026
$22.2M
COMPUTER METHODS FOR PHYSIOLOGICAL PROBLEMSR01NS011613 · NINDS · YALE UNIVERSITY · PI MICHAEL L HINES, Robert A. McDougal · 1985 to 2026
$10.4M
Extension of NEURON simulator for simulation of reaction-diffusion in neuronsR01MH086638 · NIMH · SUNY DOWNSTATE MEDICAL CENTER · PI LYTTON, WILLIAM W, MCDOUGAL, ROBERT A. · 2010 to 2025
$6.0M
Cortical and thalamic mechanisms of selective auditory attentionR01DC012947 · NIDCD · NATHAN S. KLINE INSTITUTE FOR PSYCH RES · PI NEYMOTIN, SAMUEL A, SCHROEDER, CHARLES E · 2013 to 2022
$5.2M
Microconnectomics of neocortex: a multiscale computer modelU01EB017695 · NIBIB · SUNY DOWNSTATE MEDICAL CENTER · PI LYTTON, WILLIAM W · 2014 to 2017
$2.3M
NIBIB NIH HHS U01 EB017695NIDCD NIH HHS R01 DC012947NIMH NIH HHS R01 MH086638NINDS NIH HHS R01 NS011613NINDS NIH HHS R01 NS11613NLM NIH HHS T15 LM007056
6 · The paper itself

Abstract

Neuronal persistent activity has been primarily assessed in terms of electrical mechanisms, without attention to the complex array of molecular events that also control cell excitability. We developed a multiscale neocortical model proceeding from the molecular to the network level to assess the contributions of calcium (Ca(2+)) regulation of hyperpolarization-activated cyclic nucleotide-gated (HCN) channels in providing additional and complementary support of continuing activation in the network. The network contained 776 compartmental neurons arranged in the cortical layers, connected using synapses containing AMPA/NMDA/GABAA/GABAB receptors. Metabotropic glutamate receptors (mGluR) produced inositol triphosphate (IP3) which caused the release of Ca(2+) from endoplasmic reticulum (ER) stores, with reuptake by sarco/ER Ca(2+)-ATP-ase pumps (SERCA), and influence on HCN channels. Stimulus-induced depolarization led to Ca(2+) influx via NMDA and voltage-gated Ca(2+) channels (VGCCs). After a delay, mGluR activation led to ER Ca(2+) release via IP3 receptors. These factors increased HCN channel conductance and produced firing lasting for ∼1min. The model displayed inter-scale synergies among synaptic weights, excitation/inhibition balance, firing rates, membrane depolarization, Ca(2+) levels, regulation of HCN channels, and induction of persistent activity. The interaction between inhibition and Ca(2+) at the HCN channel nexus determined a limited range of inhibition strengths for which intracellular Ca(2+) could prepare population-specific persistent activity. Interactions between metabotropic and ionotropic inputs to the neuron demonstrated how multiple pathways could contribute in a complementary manner to persistent activity. Such redundancy and complementarity via multiple pathways is a critical feature of biological systems. Mediation of activation at different time scales, and through different pathways, would be expected to protect against disruption, in this case providing stability for persistent activity.

Indexed as

Models, NeurologicalAction PotentialsAnimalsCalciumComputer SimulationHumansHyperpolarization-Activated Cyclic Nucleotide-Gated ChannelsNeocortexNeuronsReceptors, AMPAReceptors, N-Methyl-D-AspartateSynapsesCalciumHyperpolarization-Activated Cyclic Nucleotide-Gated ChannelsReceptors, AMPAReceptors, N-Methyl-D-Aspartatecomputer simulationhyperpolarization-activated cyclic nucleotide-gated (HCN) channelI(h)multiscale modelingneocortexpersistent activity

Identifiers

PMID26746357
PMCPMC4724569
OpenAlexW2250857760

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.