Evidence map›Paper›PMID 26745408›Full record

ArticleBiophysical journal2016

Optical Pushing: A Tool for Parallelized Biomolecule Manipulation.

Gerrit Sitters, Niels Laurens, Emilie J de Rijk, Holger Kress, Erwin J G Peterman, Gijs J L Wuite

Erratum issuedAbstract read
In one paragraph

Article in Biophysical journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Gerrit SittersDepartment of Physics and Astronomy and LaserLaB, VU University Amsterdam, Amsterdam, The Netherlands.
Niels LaurensDepartment of Physics and Astronomy and LaserLaB, VU University Amsterdam, Amsterdam, The Netherlands.
Emilie J de RijkDepartment of Physics and Astronomy and LaserLaB, VU University Amsterdam, Amsterdam, The Netherlands.
Holger KressExperimental Physics I, University of Bayreuth, Bayreuth, Germany; Department of Applied Physics, Eindhoven University of Technology, Eindhoven, The Netherlands.
Erwin J G PetermanDepartment of Physics and Astronomy and LaserLaB, VU University Amsterdam, Amsterdam, The Netherlands.
Gijs J L WuiteDepartment of Physics and Astronomy and LaserLaB, VU University Amsterdam, Amsterdam, The Netherlands. Electronic address: g.j.l.wuite@vu.nl.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ability to measure and manipulate single molecules has greatly advanced the field of biophysics. Yet, the addition of more single-molecule tools that enable one to measure in a parallel fashion is important to diversify the questions that can be addressed. Here we present optical pushing (OP), a single-molecule technique that is used to exert forces on many individual biomolecules tethered to microspheres using a single collimated laser beam. Forces ranging from a few femtoNewtons to several picoNewtons can be applied with a submillisecond response time. To determine forces exerted on the tethered particles by the laser, we analyzed their measured Brownian motion using, to our knowledge, a newly derived analytical model and numerical simulations. In the model, Brownian rotation of the microspheres is taken into account, which proved to be a critical component to correctly determine the applied forces. We used our OP technique to map the energy landscape of the protein-induced looping dynamics of DNA. OP can be used to apply loading rates in the range of 10(-4)-10(6) pN/s to many molecules at the same time, which makes it a tool suitable for dynamic force spectroscopy.

Indexed as

LasersMechanical PhenomenaOptical PhenomenaBiomechanical PhenomenaDNAMicrospheresNanotechnologyPhotonsProteinsDNAProteins

Identifiers

PMID26745408
PMCPMC4805865

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.