ArticleScientific reports2016
Genome-wide association study identifies three key loci for high mesocarp oil content in perennial crop oil palm.
Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
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Who cites it
30 citing papers in PubMed.
- Chromosome-scale Elaeis guineensis and E. oleifera assemblies: comparative genomics of oil palm and other Arecaceae.G3 (Bethesda, Md.) · 2024Article
- Unveiling the Secrets of Oil Palm Genetics: A Look into Omics Research.International journal of molecular sciences · 2024Review
- Article
- Exploring genetic diversity and population structure of a large grapevine (Frontiers in plant science · 2023Article
- Genome properties of key oil palm (Elaeis guineensis Jacq.) breeding populations.Journal of applied genetics · 2022Article
- Genomic selection for morphological and yield-related traits using genome-wide SNPs in oil palm.Molecular breeding : new strategies in plant improvement · 2022Article
- Oil Palm Breeding in the Modern Era: Challenges and Opportunities.Plants (Basel, Switzerland) · 2022Review
- Phenomics, genomics of oil palm (Physiology and molecular biology of plants : an international journal of functional plant biology · 2021Review
- Molecular approaches for improving oil palm for oil.Molecular breeding : new strategies in plant improvement · 2021Review
- Detection of ploidy and chromosomal aberrations in commercial oil palm using high-throughput SNP markers.Planta · 2021Article
- Anchoring a genetic map of an interspecific backcross two family to the genome builds of Elaeis.Journal of genetics · 2021Article
- An Improved Oil Palm Genome Assembly as a Valuable Resource for Crop Improvement and Comparative Genomics in thePlants (Basel, Switzerland) · 2020Article
- CRISPR/Cas mediated base editing: a practical approach for genome editing in oil palm.3 Biotech · 2020Review
- Genome wide association study of 5 agronomic traits in olive (Olea europaea L.).Scientific reports · 2019Article
- A practical genome-enabled legitimacy assay for oil palm breeding and seed production.BMC plant biology · 2019Article
- Genome-wide association mapping of date palm fruit traits.Nature communications · 2019Article
- Association Mapping Between Candidate Gene SNP and Production and Oil Quality Traits in Interspecific Oil Palm Hybrids.Plants (Basel, Switzerland) · 2019Article
- Linkage-based genome assembly improvement of oil palm (Elaeis guineensis).Scientific reports · 2019Article
- Diurnal biomarkers reveal key photosynthetic genes associated with increased oil palm yield.PloS one · 2019Article
- Development of High-Density SNP Markers and Their Application in Evaluating Genetic Diversity and Population Structure inFrontiers in plant science · 2019Article
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Authors and funding
9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
GWAS in out-crossing perennial crops is typically limited by insufficient marker density to account for population diversity and effects of population structure resulting in high false positive rates. The perennial crop oil palm is the most productive oil crop. We performed GWAS for oil-to-dry-mesocarp content (O/DM) on 2,045 genotyped tenera palms using 200K SNPs that were selected based on the short-range linkage disequilibrium distance, which is inherent with long breeding cycles and heterogeneous breeding populations. Eighty loci were significantly associated with O/DM (p ≤ 10(-4)) and three key signals were found. We then evaluated the progeny of a Deli x AVROS breeding trial and a 4% higher O/DM was observed amongst those having the beneficial genotypes at two of the three key loci (p < 0.05). We have initiated MAS and large-scale planting of elite dura and pisifera parents to generate the new commercial tenera palms with higher O/DM potential.
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