Evidence map›Paper›PMID 26743489›Full record

ArticleScientific reports2016

The ATM- and ATR-related SCD domain is over-represented in proteins involved in nervous system development.

Lukas Cara, Medina Baitemirova, Jack Follis, Maia Larios-Sanz, Albert Ribes-Zamora

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Lukas CaraDepartment of Biology, University of St. Thomas, Houston, TX, USA.
Medina BaitemirovaDepartment of Biology, University of St. Thomas, Houston, TX, USA.
Jack FollisDepartment of Mathematics, Computer Science and Cooperative Engineering, University of St. Thomas, Houston, TX, USA.
Maia Larios-SanzDepartment of Biology, University of St. Thomas, Houston, TX, USA.
Albert Ribes-ZamoraDepartment of Biology, University of St. Thomas, Houston, TX, USA.
University of St. Thomas - Texas · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

ATM and ATR are cellular kinases with a well-characterized role in the DNA-damage response. Although the complete set of ATM/ATR targets is unknown, they often contain clusters of S/TQ motifs that constitute an SCD domain. In this study, we identified putative ATM/ATR targets that have a conserved SCD domain across vertebrates. Using this approach, we have identified novel putative ATM/ATR targets in pathways known to be under direct control of these kinases. Our analysis has also unveiled significant enrichment of SCD-containing proteins in cellular pathways, such as vesicle trafficking and actin cytoskeleton, where a regulating role for ATM/ATR is either unknown or poorly understood, hinting at a much broader and overarching role for these kinases in the cell. Of particular note is the overrepresentation of conserved SCD-containing proteins involved in pathways related to neural development. This finding suggests that ATM/ATR could be directly involved in controlling this process, which may be linked to the adverse neurological effects observed in patients with mutations in ATM.

Indexed as

Actin CytoskeletonAmino Acid SequenceAnimalsAtaxia Telangiectasia Mutated ProteinsBinding SitesBrainDNA DamageGene Expression Regulation, DevelopmentalHumansModels, MolecularNeurogenesisNeuronsProtein BindingProtein DomainsProtein Structure, SecondarySequence AlignmentAtaxia Telangiectasia Mutated ProteinsATM protein, humanATR protein, human

Identifiers

PMID26743489
PMCPMC4705472
OpenAlexW2223929869

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.