Evidence map›Paper›PMID 26742696›Full record

ArticleScientific reports2016

Characterization of Rv0888, a Novel Extracellular Nuclease from Mycobacterium tuberculosis.

Guanghui Dang, Jun Cao, Yingying Cui, Ningning Song, Liping Chen, Hai Pang, Siguo Liu

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Characterization of a novelCurrent research in microbial sciences · 2026
    Article
  4. Article
  5. Article
  6. Role of phagocyte extracellular traps duringFrontiers in microbiology · 2023
    Review
  7. Review
  8. Article
  9. Review
  10. Screening of Surface-Exposed Lipoproteins ofFrontiers in microbiology · 2022
    Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Extracellular Sphingomyelinase Rv0888 ofFrontiers in immunology · 2018
    Article
  17. Comparative Genomic Analysis of Two Clonally Related Multidrug ResistantFrontiers in cellular and infection microbiology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Guanghui DangDivision of Bacterial Diseases, State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, 427 Maduan Street, Nangang Dist, Harbin 15000, PR China.
Jun CaoDivision of Bacterial Diseases, State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, 427 Maduan Street, Nangang Dist, Harbin 15000, PR China.
Yingying CuiDivision of Bacterial Diseases, State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, 427 Maduan Street, Nangang Dist, Harbin 15000, PR China.
Ningning SongDivision of Bacterial Diseases, State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, 427 Maduan Street, Nangang Dist, Harbin 15000, PR China.
Liping ChenDivision of Bacterial Diseases, State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, 427 Maduan Street, Nangang Dist, Harbin 15000, PR China.
Hai PangSchool of Medicine, Tsinghua University, Beijing, 100084, China.
Siguo LiuDivision of Bacterial Diseases, State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, 427 Maduan Street, Nangang Dist, Harbin 15000, PR China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial extracellular nucleases play important roles in virulence, biofilm formation, utilization of extracellular DNA as a nutrient, and degradation of neutrophil DNA extracellular traps. However, there is no current data available for extracellular nucleases derived from M. tuberculosis. Herein, we have identified and characterized Rv0888, an extracellular nuclease in M. tuberculosis. The protein was overexpressed in E. coli, and the purified Rv0888 protein was found to require divalent cations for activity, with an optimal temperature and pH of 41 °C and 6.5, respectively. Further results demonstrated that Rv0888 nuclease activity could be inhibited by four Chinese medicine monomers. Based on sequence analysis, Rv0888 nuclease exhibited no homology with any known extracellular nucleases, indicating that Rv0888 is a novel nuclease. Site-directed mutagenesis studies revealed that the H353, D387, and D438 residues play catalytic roles in Rv0888. In vivo infection studies confirmed that Rv0888 is required for infection and is related to pathogenicity, as the persistent ability of recombinant Mycobacterium smegmatis (rMS) Rv0888NS/MS and Rv0888S/MS is significantly higher than pMV262/MS in the lung tissue, and the Rv0888NS/MS and Rv0888S/MS could produce pathological changes in the mice lung. These results show that Rv0888 is relevant to pathogenicity of M. tuberculosis.

Indexed as

Amino Acid SequenceAnimalsBacterial ProteinsEscherichia coliExodeoxyribonucleasesFemaleGene ExpressionHydrogen-Ion ConcentrationLungMiceMice, Inbred BALB CMutagenesis, Site-DirectedMycobacterium Infections, NontuberculousMycobacterium smegmatisMycobacterium tuberculosisRecombinant ProteinsBacterial ProteinsExodeoxyribonucleasesRecombinant ProteinsVirulence Factors

Identifiers

PMID26742696
PMCPMC4733049

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.