ArticlePloS one2016
DNA Barcode Analysis of Thrips (Thysanoptera) Diversity in Pakistan Reveals Cryptic Species Complexes.
Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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Who cites it
29 citing papers in PubMed.
- Mitochondrial genetic diversity of pest and vector species, Frankliniella schultzei (Thripidae: Thripinae).Molecular biology reports · 2024Article
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- Phylogenetic and population genetic analyses ofPeerJ · 2024Article
- Invasive flower thrips, Thrips parvispinus (Karny) occurrence, host expansion and genetic diversification in a tropical poly-crop ecosystem.Molecular biology reports · 2023Article
- Molecular Studies of Relationships and Identifications Among Insects of the Subfamily Panchaetothripinae (Thysanoptera, Thripidae).Journal of insect science (Online) · 2022Article
- Review
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- "Unmasking the Villain": Integrative Taxonomy Reveals the Real Identity of the Key Pest (Thysanoptera: Thripidae) of Peanuts (Insects · 2022Article
- Article
- Parasitism, seasonality, and diversity of trombiculid mites (Trombidiformes: Parasitengona, Trombiculidae) infesting bats (Chiroptera) in Poland.Experimental & applied acarology · 2022Article
- Comparative mitogenomics of Drosophilidae and the evolution of the Zygothrica genus group (Diptera, Drosophilidae).Genetica · 2021Article
- Review
- Commodity risk assessment ofEFSA journal. European Food Safety Authority · 2021Article
- A rapid field-based assay using recombinase polymerase amplification for identification ofJournal of pest science · 2021Article
- Article
- A multiplex PCR assay for rapid identification of major tospovirus vectors reported in India.BMC genomics · 2020Article
- Two Distinct Genotypes ofInsects · 2020Article
- DNA barcoding of selectedMitochondrial DNA. Part B, Resources · 2019Article
- Categorization of species as native or nonnative using DNA sequence signatures without a complete reference library.Ecological applications : a publication of the Ecological Society of America · 2019Article
- Towards a global DNA barcode reference library for quarantine identifications of lepidopteran stemborers, with an emphasis on sugarcane pests.Scientific reports · 2019Article
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Although thrips are globally important crop pests and vectors of viral disease, species identifications are difficult because of their small size and inconspicuous morphological differences. Sequence variation in the mitochondrial COI-5' (DNA barcode) region has proven effective for the identification of species in many groups of insect pests. We analyzed barcode sequence variation among 471 thrips from various plant hosts in north-central Pakistan. The Barcode Index Number (BIN) system assigned these sequences to 55 BINs, while the Automatic Barcode Gap Discovery detected 56 partitions, a count that coincided with the number of monophyletic lineages recognized by Neighbor-Joining analysis and Bayesian inference. Congeneric species showed an average of 19% sequence divergence (range = 5.6% - 27%) at COI, while intraspecific distances averaged 0.6% (range = 0.0% - 7.6%). BIN analysis suggested that all intraspecific divergence >3.0% actually involved a species complex. In fact, sequences for three major pest species (Haplothrips reuteri, Thrips palmi, Thrips tabaci), and one predatory thrips (Aeolothrips intermedius) showed deep intraspecific divergences, providing evidence that each is a cryptic species complex. The study compiles the first barcode reference library for the thrips of Pakistan, and examines global haplotype diversity in four important pest thrips.
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