Evidence map›Paper›PMID 26740600›Full record

ArticleDiabetes2016

Next-Generation Sequencing Reveals That HLA-DRB3, -DRB4, and -DRB5 May Be Associated With Islet Autoantibodies and Risk for Childhood Type 1 Diabetes.

Lue Ping Zhao, Shehab Alshiekh, Michael Zhao, Annelie Carlsson, Helena Elding Larsson, Gun Forsander, Sten A Ivarsson, Johnny Ludvigsson, Ingrid Kockum, Claude Marcus and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Diabetes, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 71 citations in OpenAlex.

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  11. Diabetes: discovery of insulin, genetic, epigenetic and viral infection mediated regulation.The Nucleus : an international journal of cytology and allied topics · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 2 countries.

Lue Ping ZhaoPublic Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA.
Shehab AlshiekhDepartment of Clinical Sciences, Lund University/Clinical Research Centre, Skåne University Hospital, Malmö, Sweden.
Michael ZhaoPublic Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA.
Annelie CarlssonDepartment of Pediatrics, Lund University, Lund, Sweden.
Helena Elding LarssonDepartment of Clinical Sciences, Lund University/Clinical Research Centre, Skåne University Hospital, Malmö, Sweden.
Gun ForsanderDepartment of Pediatrics, The Queen Silvia Children's Hospital, Sahlgrenska University Hospital, Gothenburg, Sweden.
Sten A IvarssonDepartment of Clinical Sciences, Lund University/Clinical Research Centre, Skåne University Hospital, Malmö, Sweden.
Johnny LudvigssonDepartment of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden.
Ingrid KockumDepartment of Clinical Neurosciences, Karolinska Institutet, Solna, Sweden.
Claude MarcusDepartment of Clinical Science, Karolinska Institutet, Huddinge, Sweden.
Martina PerssonDepartment of Clinical Science, Karolinska Institutet, Huddinge, Sweden.
Ulf SamuelssonDepartment of Clinical and Experimental Medicine, Linköping University, Linköping, Sweden.
Eva ÖrtqvistDepartment of Women's and Children's Health, Karolinska Institutet, Solna, Sweden.
Chul-Woo PyoClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA.
Wyatt C NelsonClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA.
Daniel E GeraghtyClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA.
Åke LernmarkDepartment of Clinical Sciences, Lund University/Clinical Research Centre, Skåne University Hospital, Malmö, Sweden ake.lernmark@med.lu.se.
Better Diabetes Diagnosis (BDD) Study Group
Fred Hutch Cancer Center · USKarolinska Institutet · SELund University · SELinköping University · SESkåne University Hospital · SESahlgrenska University Hospital · SE

Funding

The Environmental Triggers of Diabetes (TEDDY) in SwedenU01DK063861 · NIDDK · UNIVERSITY OF WASHINGTON · PI LERNMARK, AKE · 2003 to 2022
$13.4M
The Environmental Triggers of Diabetes (TEDDY)UC4DK063861 · NIDDK · LUNDS UNIVERSITET · PI LERNMARK, AKE · 2013 to 2013
$5.7M
ISLET CELL MEMBRANE ANTIBODIES IN DIABTESR01DK026190 · NIDDK · UNIVERSITY OF WASHINGTON · PI HAMPE, CHRISTIANE S · 1986 to 2016
$4.9M
NIDDK NIH HHS DK-26190NIDDK NIH HHS DK-63861NIDDK NIH HHS R01 DK026190NIDDK NIH HHS U01 DK063861NIDDK NIH HHS UC4 DK063861
6 · The paper itself

Abstract

The possible contribution of HLA-DRB3, -DRB4, and -DRB5 alleles to type 1 diabetes risk and to insulin autoantibody (IAA), GAD65 (GAD autoantibody [GADA]), IA-2 antigen (IA-2A), or ZnT8 against either of the three amino acid variants R, W, or Q at position 325 (ZnT8RA, ZnT8WA, and ZnT8QA, respectively) at clinical diagnosis is unclear. Next-generation sequencing (NGS) was used to determine all DRB alleles in consecutively diagnosed patients ages 1-18 years with islet autoantibody-positive type 1 diabetes (n = 970) and control subjects (n = 448). DRB3, DRB4, or DRB5 alleles were tested for an association with the risk of DRB1 for autoantibodies, type 1 diabetes, or both. The association between type 1 diabetes and DRB1*03:01:01 was affected by DRB3*01:01:02 and DRB3*02:02:01. These DRB3 alleles were associated positively with GADA but negatively with ZnT8WA, IA-2A, and IAA. The negative association between type 1 diabetes and DRB1*13:01:01 was affected by DRB3*01:01:02 to increase the risk and by DRB3*02:02:01 to maintain a negative association. DRB4*01:03:01 was strongly associated with type 1 diabetes (P = 10(-36)), yet its association was extensively affected by DRB1 alleles from protective (DRB1*04:03:01) to high (DRB1*04:01:01) risk, but its association with DRB1*04:05:01 decreased the risk. HLA-DRB3, -DRB4, and -DRB5 affect type 1 diabetes risk and islet autoantibodies. HLA typing with NGS should prove useful to select participants for prevention or intervention trials.

Indexed as

AdolescentAutoantibodiesCase-Control StudiesCation Transport ProteinsChildChild, PreschoolDiabetes Mellitus, Type 1FemaleGenetic Predisposition to DiseaseGlutamate DecarboxylaseHigh-Throughput Nucleotide SequencingHLA-DRB1 ChainsHLA-DRB3 ChainsHLA-DRB4 ChainsHLA-DRB5 ChainsHumansAutoantibodiesCation Transport ProteinsGlutamate Decarboxylaseglutamate decarboxylase 2HLA-DRB1 ChainsHLA-DRB3 ChainsHLA-DRB4 ChainsHLA-DRB5 ChainsICA512 autoantibodyInsulinSLC30A8 protein, humanZinc Transporter 8

Identifiers

PMID26740600
PMCPMC4764147
OpenAlexW2267213436

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.