Evidence map›Paper›PMID 26740515›Full record

ArticleClinical infectious diseases : an official publication of the Infectious Diseases Society of America2016

Persistent Infections by Nontyphoidal Salmonella in Humans: Epidemiology and Genetics.

Alex Marzel, Prerak T Desai, Alina Goren, Yosef Ilan Schorr, Israel Nissan, Steffen Porwollik, Lea Valinsky, Michael McClelland, Galia Rahav, Ohad Gal-Mor

Open access · bronzeAbstract read
In one paragraph

Article in Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed
16.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 116 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Persistence of non-typhoidalFrontiers in microbiology · 2026
    Review
  7. Solid-phase enrichment uncovers a hiddenFrontiers in public health · 2026
    Article
  8. Article
  9. Genetic diversity ofGut microbes · 2025
    Article
  10. Article
  11. Article
  12. Emergence of carbapenem-resistantMicrobiology spectrum · 2025
    Article
  13. Risk factors associated with long-term shedding infections of non-typhoidal Salmonella in humans.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2025
    Article
  14. Article
  15. A multi-country outbreak ofEuro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2025
    Article
  16. Case Report: A case ofFrontiers in medicine · 2025
    Article
  17. Foodborne Infections andVaccines · 2024
    Review
  18. Article
  19. Shedding of nontyphoidalJournal of clinical microbiology · 2024
    Article
  20. Outbreak-associatedJournal of clinical microbiology · 2024
    Article

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Alex MarzelInfectious Diseases Research Laboratory, Sheba Medical Center, Tel-Hashomer.
Prerak T DesaiDepartment of Microbiology and Molecular Genetics, University of California, Irvine.
Alina GorenInfectious Diseases Research Laboratory, Sheba Medical Center, Tel-Hashomer.
Yosef Ilan SchorrMinistry of Health Central Laboratories, Jerusalem.
Israel NissanMinistry of Health Central Laboratories, Jerusalem.
Steffen PorwollikDepartment of Microbiology and Molecular Genetics, University of California, Irvine.
Lea ValinskyMinistry of Health Central Laboratories, Jerusalem.
Michael McClellandDepartment of Microbiology and Molecular Genetics, University of California, Irvine.
Galia RahavInfectious Diseases Research Laboratory, Sheba Medical Center, Tel-Hashomer.
Ohad Gal-MorInfectious Diseases Research Laboratory, Sheba Medical Center, Tel-Hashomer.
Israel Ministry of Health · ILUniversity of California, Irvine · USSheba Medical Center · ILTel Aviv University · IL

Funding

NITRIC OXIDE CYTOTOXICITY IN SALMONELLOSISR01AI039557 · NIAID · UNIVERSITY OF WASHINGTON · PI FANG, FERRIC C · 1997 to 2012
$4.1M
Comparative Genomics in the EnterobateriaceaeR01AI052237 · NIAID · WASHINGTON UNIVERSITY · PI WEINSTOCK, GEORGE M · 2002 to 2009
$4.1M
Salmonella polymicrobial interactionsR01AI073971 · NIAID · OHIO STATE UNIVERSITY · PI AHMER, BRIAN M · 2008 to 2012
$2.8M
Identification of Salmonella Genes Important for Systemic ColonizationR01AI083646 · NIAID · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI ANDREWS-POLYMENIS, HELENE L · 2009 to 2012
$1.6M
Salmonella Genes Associated with Colonization of Specific HostsR01AI075093 · NIAID · VACCINE RESEARCH INSTITUTE OF SAN DIEGO · PI MCCLELLAND, MICHAEL · 2009 to 2010
$928k
Identification of Salmonella Genes Involved in Persistence in the Murine IntestinR56AI077645 · NIAID · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI ANDREWS-POLYMENIS, HELENE L · 2009 to 2009
$423k
MECHANISMS OF NITRIC OXIDE CYTOTOXICITY IN SALMONELLOSISR21AI039557 · NIAID · UNIVERSITY OF COLORADO DENVER · PI FANG, FERRIC C · 1996 to 1996
–
NIAID NIH HHS AI039557NIAID NIH HHS AI052237NIAID NIH HHS AI073971NIAID NIH HHS AI075093NIAID NIH HHS AI077645NIAID NIH HHS AI083646NIAID NIH HHS HHSN272200900040CNIAID NIH HHS R01 AI039557NIAID NIH HHS R01 AI052237NIAID NIH HHS R01 AI073971NIAID NIH HHS R01 AI075093NIAID NIH HHS R01 AI083646NIAID NIH HHS R56 AI077645PHS HHS HHSN272200900040C
6 · The paper itself

Abstract

backgroundAlthough chronic infections by typhoidal Salmonella are well-known, prolonged human infections by nontyphoidal Salmonella (NTS) are poorly characterized.

methodsWe retrospectively analyzed 48 345 culture-confirmed NTS infections that occurred in Israel 1995-2012. A case-control study was performed to identify risk factors associated with persistent infections. Whole-genome-sequencing, pulsed-field gel electrophoresis (PFGE), and a mouse infection model were used to study genetic and phenotypic differences between same-patient persistent, recurring isolates.

resultsIn total, 1047 cases of persistent NTS infections, comprising 2.2% of all reported cases of salmonellosis, were identified. The persistence periods ranged between 30 days to 8.3 years. The majority (93%) of the persistently infected patients were immunocompetent, and 65% were symptomatic with relapsing diarrhea, indicating a distinct clinical manifestation from the asymptomatic carriage of typhoidal Salmonella. Four NTS serovars (Mbandaka, Bredeney, Infantis and Virchow) were found to be significantly more frequently associated with persistence than others. Comparative genomics between early and later isolates obtained from the same patients confirmed clonal infection and showed 0 to 10 SNPs between persistent isolates. A different composition of mobile genetic elements (plasmids and phages) or amino acid substitutions in global regulators was identified in multiple cases. These changes resulted in differences in phenotype and virulence between early and later same-patient isolates.

conclusionsThese results illuminate the overlooked clinical manifestation of persistent salmonellosis that can serve as a human reservoir for NTS infections. Additionally, we demonstrate mechanisms of in-host microevolution and exhibit their potential to shape Salmonella pathogenicity, antimicrobial resistance and host-pathogen interactions.

Indexed as

AdolescentAdultAgedAnimalsChildChild, PreschoolChronic DiseaseDisease Models, AnimalDNA, BacterialFemaleGenome, BacterialHumansInfantIsraelMaleMiceDNA, Bacterialepidemiologypersistent infectionSalmonella entericasalmonellosisWGS

Identifiers

PMID26740515
PMCPMC4787607
OpenAlexW2239735144

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.