Evidence map›Paper›PMID 26739880›Full record

ArticleMolecular biology and evolution2016

Euarchontan Opsin Variation Brings New Focus to Primate Origins.

Amanda D Melin, Konstans Wells, Gillian L Moritz, Logan Kistler, Joseph D Orkin, Robert M Timm, Henry Bernard, Maklarin B Lakim, George H Perry, Shoji Kawamura and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular biology and evolution, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
6.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
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  8. Functional preservation and variation in the cone opsin genes of nocturnal tarsiers.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 10 institutions in 6 countries.

Amanda D MelinDepartment of Anthropology, Dartmouth College, Hanover, NH Department of Anthropology and Archaeology, and Alberta Children's Hospital Research Institute, University of Calgary, Calgary, AB amanda.melin@ucalgary.ca nathaniel.j.dominy@dartmouth.edu.
Konstans WellsEnvironmental Futures Research Institute, Griffith University, Brisbane, QLD, Australia.
Gillian L MoritzDepartment of Biological Sciences, Class of 1978 Life Sciences Center, Dartmouth College, Hanover, NH Department of Evolutionary Anthropology, Duke University.
Logan KistlerDepartments of Anthropology and Biology, Pennsylvania State University School of Life Sciences, Gibbet Hill Campus, University of Warwick, Coventry, United Kingdom.
Joseph D OrkinDepartment of Anthropology and Archaeology, and Alberta Children's Hospital Research Institute, University of Calgary, Calgary, AB Department of Anthropology, Washington University in St. Louis.
Robert M TimmDepartment of Ecology and Evolutionary Biology, University of Kansas, Lawrence.
Henry BernardInstitute for Tropical Biology and Conservation, Universiti Malaysia Sabah, Kota Kinabalu, Sabah, Malaysia.
Maklarin B LakimSabah Parks, Lot 45 & 46 KK Times Square Coastal Highway, Kota Kinabalu, Sabah, Malaysia.
George H PerryDepartments of Anthropology and Biology, Pennsylvania State University.
Shoji KawamuraDepartment of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Japan.
Nathaniel J DominyDepartment of Anthropology, Dartmouth College, Hanover, NH Department of Biological Sciences, Class of 1978 Life Sciences Center, Dartmouth College, Hanover, NH amanda.melin@ucalgary.ca nathaniel.j.dominy@dartmouth.edu.
Alberta Children's Hospital · CADartmouth College · USDuke University · USGriffith University · AUPennsylvania State University · USSabah Parks · MYThe University of Tokyo · JPUniversiti of Malaysia Sabah · MYUniversity of Kansas · USUniversity of Warwick · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Debate on the adaptive origins of primates has long focused on the functional ecology of the primate visual system. For example, it is hypothesized that variable expression of short- (SWS1) and middle-to-long-wavelength sensitive (M/LWS) opsins, which confer color vision, can be used to infer ancestral activity patterns and therefore selective ecological pressures. A problem with this approach is that opsin gene variation is incompletely known in the grandorder Euarchonta, that is, the orders Scandentia (treeshrews), Dermoptera (colugos), and Primates. The ancestral state of primate color vision is therefore uncertain. Here, we report on the genes (OPN1SW and OPN1LW) that encode SWS1 and M/LWS opsins in seven species of treeshrew, including the sole nocturnal scandentian Ptilocercus lowii. In addition, we examined the opsin genes of the Central American woolly opossum (Caluromys derbianus), an enduring ecological analogue in the debate on primate origins. Our results indicate: 1) retention of ultraviolet (UV) visual sensitivity in C. derbianus and a shift from UV to blue spectral sensitivities at the base of Euarchonta; 2) ancient pseudogenization of OPN1SW in the ancestors of P. lowii, but a signature of purifying selection in those of C. derbianus; and, 3) the absence of OPN1LW polymorphism among diurnal treeshrews. These findings suggest functional variation in the color vision of nocturnal mammals and a distinctive visual ecology of early primates, perhaps one that demanded greater spatial resolution under light levels that could support cone-mediated color discrimination.

Indexed as

Evolution, MolecularAnimalsColor VisionHumansOpossumsOpsinsPhylogenyPrimatesRod OpsinsUltraviolet Rayslong-wavelength opsinOpsinsRod Opsinsshort-wavelength opsinCaluromyscolor visionDendrogaleEuarchontaPtilocercussensory ecologyTupaia

Identifiers

PMID26739880
PMCPMC4776711
OpenAlexW2231123677

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.