Evidence map›Paper›PMID 26739568›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Sex-specific silencing of X-linked genes by Xist RNA.

Srimonta Gayen, Emily Maclary, Michael Hinten, Sundeep Kalantry

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Rat Glioma 101.8 Tissue Strain: Molecular and Morphological Features.International journal of molecular sciences · 2025
    Article
  5. Genome research · 2025
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Expression of long noncoding RNAFrontiers in endocrinology · 2022
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Srimonta GayenDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, MI 48109.
Emily MaclaryDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, MI 48109.
Michael HintenDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, MI 48109.
Sundeep KalantryDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, MI 48109 kalantry@umich.edu.
University of Michigan–Ann Arbor · US

Funding

PREDOCTORAL TRAINING IN GENETICST32GM007544 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MORAN, JOHN V. · 1985 to 2022
$11.3M
Initiation of Epigenetic Transcriptional RegulationDP2OD008646 · OD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KALANTRY, SUNDEEP · 2011 to 2011
$2.3M
Career Training in Reproductive BiologyT32HD079342 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Suzanne M MOENTER · 2014 to 2026
$2.3M
Mechanistic Analysis of Parent-of-Origin-Specific Gene Expression in the PlacentaF31HD080280 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MACLARY, EMILY TOMPKINS · 2014 to 2015
$67k
NICHD NIH HHS 1F31HD080280-01NICHD NIH HHS F31 HD080280NICHD NIH HHS T32 HD079342NIGMS NIH HHS 5-T32-GM07544NIGMS NIH HHS T32 GM007544NIH HHS DP2 OD008646NIH HHS DP2-OD-008646-01
6 · The paper itself

Abstract

X-inactive specific transcript (Xist) long noncoding RNA (lncRNA) is thought to catalyze silencing of X-linked genes in cis during X-chromosome inactivation, which equalizes X-linked gene dosage between male and female mammals. To test the impact of Xist RNA on X-linked gene silencing, we ectopically induced endogenous Xist by ablating the antisense repressor Tsix in mice. We find that ectopic Xist RNA induction and subsequent X-linked gene silencing is sex specific in embryos and in differentiating embryonic stem cells (ESCs) and epiblast stem cells (EpiSCs). A higher frequency of X(ΔTsix)Y male cells displayed ectopic Xist RNA coating compared with X(ΔTsix)X female cells. This increase reflected the inability of X(ΔTsix)Y cells to efficiently silence X-linked genes compared with X(ΔTsix)X cells, despite equivalent Xist RNA induction and coating. Silencing of genes on both Xs resulted in significantly reduced proliferation and increased cell death in X(ΔTsix)X female cells relative to X(ΔTsix)Y male cells. Thus, whereas Xist RNA can inactivate the X chromosome in females it may not do so in males. We further found comparable silencing in differentiating X(ΔTsix)Y and 39,X(ΔTsix) (X(ΔTsix)O) ESCs, excluding the Y chromosome and instead implicating the X-chromosome dose as the source of the sex-specific differences. Because X(ΔTsix)X female embryonic epiblast cells and EpiSCs harbor an inactivated X chromosome prior to ectopic inactivation of the active X(ΔTsix) X chromosome, we propose that the increased expression of one or more X-inactivation escapees activates Xist and, separately, helps trigger X-linked gene silencing.

Indexed as

Gene SilencingGenes, X-LinkedSex CharacteristicsAnimalsCell DifferentiationEmbryo ImplantationEmbryo, MammalianFemaleGerm LayersMaleMiceModels, BiologicalMouse Embryonic Stem CellsRNA, Long NoncodingX Chromosome InactivationY ChromosomeRNA, Long NoncodingXIST non-coding RNAembryonic stem cellsepiblast stem cellsTsixX inactivationXist

Identifiers

PMID26739568
PMCPMC4725534
OpenAlexW2222784917

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.