Evidence map›Paper›PMID 26735969›Full record

ArticlePLoS neglected tropical diseases2016

Evaluation in Cameroon of a Novel, Simplified Methodology to Assist Molecular Microbiological Analysis of V. cholerae in Resource-Limited Settings.

Amanda K Debes, Jerome Ateudjieu, Etienne Guenou, Etiene Guenou, Anna Lena Lopez, Mark Philip Bugayong, Pearl Joy Retiban, Marcelino Garrine, Inacio Mandomando, Shan Li and 2 more

Erratum issuedOpen access · goldAbstract readMulticenter Study
In one paragraph

Article in PLoS neglected tropical diseases, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 24 citations in OpenAlex.

  1. Trial
  2. Article
  3. Review of Rapid Diagnostic Methods forThe East African health research journal · 2023
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  6. Article
  7. Molecular characterization ofJournal of medical microbiology · 2021
    Article
  8. Article
  9. Article
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  11. Article
  12. Article
  13. Whatman Protein Saver Cards for Storage and Detection of Parasitic Enteropathogens.The American journal of tropical medicine and hygiene · 2018
    Article
  14. Article
  15. Environmental Surveillance ofFrontiers in microbiology · 2018
    Article
  16. Direct Dried Stool Sampling on Filter Paper for Molecular Analyses of Cholera.The American journal of tropical medicine and hygiene · 2016
    Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 4 countries.

Amanda K DebesJohns Hopkins University Bloomberg School of Public Health, Baltimore, Maryland, United States of America.
Jerome AteudjieuDepartment of Biomedical Sciences, University of Dschang, Dschang, Cameroon.
Etienne Guenou
Etiene GuenouM.A. SANTE (Meilleur Accès aux Soins de Santé), Yaoundé, Cameroon.
Anna Lena LopezUniversity of the Philippines Manila-National Institutes of Health, Manila, Philippines.
Mark Philip BugayongUniversity of the Philippines Manila-National Institutes of Health, Manila, Philippines.
Pearl Joy RetibanUniversity of the Philippines Manila-National Institutes of Health, Manila, Philippines.
Marcelino GarrineCentro de Investigação em Saúde de Manhiça (CISM), Maputo, Mozambique.
Inacio MandomandoCentro de Investigação em Saúde de Manhiça (CISM), Maputo, Mozambique.
Shan LiUniversity of Maryland School of Medicine, Baltimore, Maryland, United States of America.
O Colin StineUniversity of Maryland School of Medicine, Baltimore, Maryland, United States of America.
David A SackJohns Hopkins University Bloomberg School of Public Health, Baltimore, Maryland, United States of America.
Johns Hopkins University · USResearch Institute for Tropical Medicine · PHUniversity of Maryland, Baltimore · USManhiça Health Research Centre · MZMinistry of Health · MZMinistry of Public Health · CMUniversity of the Philippines Manila · PH

Funding

PHS HHS R0-1A1039129
6 · The paper itself

Abstract

backgroundVibrio cholerae is endemic in South Asia and Africa where outbreaks of cholera occur widely and are particularly associated with poverty and poor sanitation. Knowledge of the genetic diversity of toxigenic V. cholerae isolates, particularly in Africa, remains scarce. The constraints in improving this understanding is not only the lack of regular cholera disease surveillance, but also the lack of laboratory capabilities in endemic countries to preserve, store and ship isolates in a timely manner. We evaluated the use of simplified sample preservation methods for molecular characterization using multi-locus variable-number tandem-repeat analysis (MLVA) for differentiation of Vibrio cholerae genotypes. METHODS AND

findingsForty-seven V. cholerae isolates and 18 enriched clinical specimens (e.g. stool specimens after enrichment in broth) from cholera outbreaks in Cameroon were preserved on Whatman filter paper for DNA extraction. The samples were collected from two geographically distinct outbreaks in the Far North of Cameroon (FNC) in June 2014 and October 2014. In addition, a convenience sample of 14 isolates from the Philippines and 8 from Mozambique were analyzed. All 87 DNAs were successfully analyzed including 16 paired samples, one a cultured isolate and the other the enriched specimen from which the isolate was collected. Genotypic results were identical between 15 enriched specimens and their culture isolates and the other pair differed at single locus. Two closely related, but distinct clonal complexes were identified among the Cameroonian specimens from 2014.

conclusionsCollecting V. cholerae using simplified laboratory methods in remote and low-resource settings allows for subsequent advanced molecular characterization of V. cholerae O1. These simplified DNA preservation methods identify V. cholerae and make possible timely information regarding the genetic diversity of V. cholerae; our results set the stage for continued molecular epidemiological research to better understand the transmission and dissemination of V. cholerae in Africa and elsewhere worldwide.

Indexed as

Minisatellite RepeatsCameroonChild, PreschoolCholeraGenetic VariationGenotypeHumansInfantInfant, NewbornMolecular EpidemiologyMolecular TypingMozambiquePaperPhilippinesSpecimen HandlingVibrio cholerae

Identifiers

PMID26735969
PMCPMC4703203
OpenAlexW2224647273

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.