Evidence map›Paper›PMID 26734059›Full record

ArticleFrontiers in genetics2015

Next-Generation Sequencing for Binary Protein-Protein Interactions.

Bernhard Suter, Xinmin Zhang, C Gustavo Pesce, Andrew R Mendelsohn, Savithramma P Dinesh-Kumar, Jian-Hua Mao

Open access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 42 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Powdery mildew effectors AVRMolecular plant pathology · 2024
    Article
  5. Review
  6. Unraveling Protein Interactions between the Temperate Virus Bam35 and ItsInternational journal of molecular sciences · 2021
    Article
  7. Article
  8. Article
  9. Article
  10. High-resolution protein-protein interaction mapping using all-The Journal of biological chemistry · 2019
    Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Bernhard SuterNext Interactions, Inc., Richmond CA, USA.
Xinmin ZhangBioInfoRx, Inc., Madison WI, USA.
C Gustavo PesceNext Interactions, Inc., Richmond CA, USA.
Andrew R MendelsohnNext Interactions, Inc., RichmondCA, USA; Regenerative Sciences Institute, SunnyvaleCA, USA.
Savithramma P Dinesh-KumarDepartment of Plant Biology, University of California, Davis, Davis CA, USA.
Jian-Hua MaoLife Sciences Division, Lawrence Berkeley National Laboratory, Berkeley CA, USA.
Next Interactions (United States) · USLawrence Berkeley National Laboratory · USRegenerative Sciences Institute · USUniversity of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The yeast two-hybrid (Y2H) system exploits host cell genetics in order to display binary protein-protein interactions (PPIs) via defined and selectable phenotypes. Numerous improvements have been made to this method, adapting the screening principle for diverse applications, including drug discovery and the scale-up for proteome wide interaction screens in human and other organisms. Here we discuss a systematic workflow and analysis scheme for screening data generated by Y2H and related assays that includes high-throughput selection procedures, readout of comprehensive results via next-generation sequencing (NGS), and the interpretation of interaction data via quantitative statistics. The novel assays and tools will serve the broader scientific community to harness the power of NGS technology to address PPI networks in health and disease. We discuss examples of how this next-generation platform can be applied to address specific questions in diverse fields of biology and medicine.

Indexed as

interactome mappingnext-generation sequencingprotein–protein interactionsquantitative interaction profilesyeast two-hybrid

Identifiers

PMID26734059
PMCPMC4681833
OpenAlexW2177447282

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.