Evidence map›Paper›PMID 26734033›Full record

ArticleFrontiers in plant science2015

Comparative Genomics of Pathogenic and Nonpathogenic Strains of Xanthomonas arboricola Unveil Molecular and Evolutionary Events Linked to Pathoadaptation.

Sophie Cesbron, Martial Briand, Salwa Essakhi, Sophie Gironde, Tristan Boureau, Charles Manceau, Marion Fischer-Le Saux, Marie-Agnès Jacques

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
12.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 108 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Comparative genomics of 'Microbial genomics · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Amylase-associated genetic pattern inApplied and environmental microbiology · 2024
    Article
  11. Comparative genomics-based insights intoApplied and environmental microbiology · 2024
    Article
  12. Article
  13. Article
  14. Three new species,Frontiers in microbiology · 2024
    Article
  15. Article
  16. Specific and sensitive detection tools forFrontiers in plant science · 2023
    Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Sophie CesbronINRA, UMR 1345 Institut de Recherche en Horticulture et Semences Beaucouzé, France.
Martial BriandINRA, UMR 1345 Institut de Recherche en Horticulture et Semences Beaucouzé, France.
Salwa EssakhiINRA, UMR 1345 Institut de Recherche en Horticulture et Semences Beaucouzé, France.
Sophie GirondeINRA, UMR 1345 Institut de Recherche en Horticulture et Semences Beaucouzé, France.
Tristan BoureauUniversité d'Angers, UMR 1345 Institut de Recherche en Horticulture et Semences Angers, France.
Charles ManceauINRA, UMR 1345 Institut de Recherche en Horticulture et Semences Beaucouzé, France.
Marion Fischer-Le SauxINRA, UMR 1345 Institut de Recherche en Horticulture et Semences Beaucouzé, France.
Marie-Agnès JacquesINRA, UMR 1345 Institut de Recherche en Horticulture et Semences Beaucouzé, France.
Institut de Recherche en Horticulture et Semences · FRUniversité Clermont Auvergne · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The bacterial species Xanthomonas arboricola contains plant pathogenic and nonpathogenic strains. It includes the pathogen X. arboricola pv. juglandis, causing the bacterial blight of Juglans regia. The emergence of a new bacterial disease of J. regia in France called vertical oozing canker (VOC) was previously described and the causal agent was identified as a distinct genetic lineage within the pathovar juglandis. Symptoms on walnut leaves and fruits are similar to those of a bacterial blight but VOC includes also cankers on trunk and branches. In this work, we used comparative genomics and physiological tests to detect differences between four X. arboricola strains isolated from walnut tree: strain CFBP 2528 causing walnut blight (WB), strain CFBP 7179 causing VOC and two nonpathogenic strains, CFBP 7634 and CFBP 7651, isolated from healthy walnut buds. Whole genome sequence comparisons revealed that pathogenic strains possess a larger and wider range of mobile genetic elements than nonpathogenic strains. One pathogenic strain, CFBP 7179, possessed a specific integrative and conjugative element (ICE) of 95 kb encoding genes involved in copper resistance, transport and regulation. The type three effector repertoire was larger in pathogenic strains than in nonpathogenic strains. Moreover, CFBP 7634 strain lacked the type three secretion system encoding genes. The flagellar system appeared incomplete and nonfunctional in the pathogenic strain CFBP 2528. Differential sets of chemoreceptor and different repertoires of genes coding adhesins were identified between pathogenic and nonpathogenic strains. Besides these differences, some strain-specific differences were also observed. Altogether, this study provides valuable insights to highlight the mechanisms involved in ecology, environment perception, plant adhesion and interaction, leading to the emergence of new strains in a dynamic environment.

Indexed as

bacterial blightcopper resistanceICEJuglans regiavertical oozing canker

Identifiers

PMID26734033
PMCPMC4686621
OpenAlexW2182497792

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.