Evidence map›Paper›PMID 26732651›Full record

ArticleScientific reports2016

The recent ancestry of Middle East respiratory syndrome coronavirus in Korea has been shaped by recombination.

Jin Il Kim, You-Jin Kim, Philippe Lemey, Ilseob Lee, Sehee Park, Joon-Yong Bae, Donghwan Kim, Hyejin Kim, Seok-Il Jang, Jeong-Sun Yang and 14 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 32 citations in OpenAlex.

  1. Review
  2. Article
  3. Recombination in Positive-Strand RNA Viruses.Frontiers in microbiology · 2022
    Review
  4. Article
  5. A genetic barcode of SARS-CoV-2 for monitoring global distribution of different clades during the COVID-19 pandemic.International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2020
    Article
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  7. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 10 institutions in 3 countries.

Jin Il KimDepartment of Microbiology, the Institute for Viral Diseases and Korea Bank for Pathogenic Viruses, College of Medicine, Korea University, Seoul 136-705, Republic of Korea.
You-Jin KimDivision of Respiratory Viruses.
Philippe LemeyDepartment of Microbiology and Immunology, Rega Institute, KU Leuven - University of Leuven, Leuven 3000, Belgium.
Ilseob LeeDepartment of Microbiology, the Institute for Viral Diseases and Korea Bank for Pathogenic Viruses, College of Medicine, Korea University, Seoul 136-705, Republic of Korea.
Sehee ParkDepartment of Microbiology, the Institute for Viral Diseases and Korea Bank for Pathogenic Viruses, College of Medicine, Korea University, Seoul 136-705, Republic of Korea.
Joon-Yong BaeDepartment of Microbiology, the Institute for Viral Diseases and Korea Bank for Pathogenic Viruses, College of Medicine, Korea University, Seoul 136-705, Republic of Korea.
Donghwan KimDepartment of Microbiology, the Institute for Viral Diseases and Korea Bank for Pathogenic Viruses, College of Medicine, Korea University, Seoul 136-705, Republic of Korea.
Hyejin KimDepartment of Microbiology, the Institute for Viral Diseases and Korea Bank for Pathogenic Viruses, College of Medicine, Korea University, Seoul 136-705, Republic of Korea.
Seok-Il JangDepartment of Microbiology, the Institute for Viral Diseases and Korea Bank for Pathogenic Viruses, College of Medicine, Korea University, Seoul 136-705, Republic of Korea.
Jeong-Sun YangDivision of Respiratory Viruses.
Hak KimDivision of Respiratory Viruses.
Dae-Won KimDivision of Biosafety Evaluation and Control.
Jeong-Gu NamDivision of Respiratory Viruses.
Sung Soon KimDivision of Respiratory Viruses.
Kisoon KimDivision of Influenza Virus, Center for Infectious Diseases.
Jae Myun LeeDepartment of Microbiology and Immunology, Yonsei University College of Medicine, Seoul 120-752, Republic of Korea.
Man Ki SongLaboratory Science Division, International Vaccine Institute, Seoul 151-742, Republic of Korea.
Daesub SongCollege of Pharmacy, Korea University, Sejong 339-700, Republic of Korea.
Jun ChangDivision of Life &Pharmaceutical Sciences, Ewha Womans University, Seoul 120-750, Republic of Korea.
Kee-Jong HongATGen, Seongnam 463-400, Republic of Korea.
Yong-Soo BaeDepartment of Biological Science, Sungkyunkwan University, Suwon 440-746, Republic of Korea.
Jin-Won SongDepartment of Microbiology, the Institute for Viral Diseases and Korea Bank for Pathogenic Viruses, College of Medicine, Korea University, Seoul 136-705, Republic of Korea.
Joo-Shil LeeKorea National Institute of Health, Osong 361-951, Republic of Korea.
Man-Seong ParkDepartment of Microbiology, the Institute for Viral Diseases and Korea Bank for Pathogenic Viruses, College of Medicine, Korea University, Seoul 136-705, Republic of Korea.
Korea University · KRCrystalGenomics (South Korea) · KREwha Womans University · KRInternational Vaccine Institute · KRKorea National Institute of Health · KRNational Center for Infectious Diseases · USRega Institute for Medical Research · BESungkyunkwan University · KRThe Korean Society of Nephrology · KRYonsei University · KR

Funding

European Research Council 260864
6 · The paper itself

Abstract

Middle East respiratory syndrome coronavirus (MERS-CoV) causes severe cases of human respiratory disease. Since 2012, the victims have mainly come from the Middle East countries or sporadically from some other geographical regions seeded by the travelers who visited the Middle East. Such an introduction through travelling led to the emergence of a MERS-CoV outbreak in Korea in May 2015, which caused more than 140 confirmed human cases in less than a month. Using 70 complete genome sequences of MERS-CoV isolates, including the most recent sequences for the Korean and Chinese isolates, we reconstructed the phylogenetic relationships of the complete genome and the individual protein coding regions. The Korean MERS-CoV strain clustered in the previously established Hafr-Al-Batin-1_2013 clade together with two Saudi Arabian and one Chinese strain sampled in 2015. Although these four strains remained monophyletic in the entire protein-coding region, this clade showed different phylogenetic relationships across the genome, indicating a shared unique recombination pattern that is different from previously reported putative recombination strains. Our findings suggest that the recent ancestor of the Korean and its related MERS-CoV strains is characterized by unique mosaic genome pattern that is different from other putative recombinants.

Indexed as

Recombination, GeneticCoronavirus InfectionsEvolution, MolecularGenome, ViralHumansMiddle East Respiratory Syndrome CoronavirusOpen Reading FramesPhylogenyRepublic of Korea

Identifiers

PMID26732651
PMCPMC4702133
OpenAlexW2231373257

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.