Evidence map›Paper›PMID 26731610›Full record

ArticleBiochemistry2016

Polyketide Ring Expansion Mediated by a Thioesterase, Chain Elongation and Cyclization Domain, in Azinomycin Biosynthesis: Characterization of AziB and AziG.

Shogo Mori, Dinesh Simkhada, Huitu Zhang, Megan S Erb, Yang Zhang, Howard Williams, Dmytro Fedoseyenko, William K Russell, Doyong Kim, Nathan Fleer and 2 more

Abstract read
In one paragraph

Article in Biochemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Thioesterase enzyme families: Functions, structures, and mechanisms.Protein science : a publication of the Protein Society · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Shogo MoriDepartment of Chemistry, Texas A&M University , College Station, Texas 77843, United States.
Dinesh SimkhadaDepartment of Chemistry, Texas A&M University , College Station, Texas 77843, United States.
Huitu ZhangDepartment of Chemistry, Texas A&M University , College Station, Texas 77843, United States.
Megan S ErbDepartment of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14853, United States.
Yang ZhangDepartment of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14853, United States.
Howard WilliamsDepartment of Chemistry, Texas A&M University , College Station, Texas 77843, United States.
Dmytro FedoseyenkoDepartment of Chemistry, Texas A&M University , College Station, Texas 77843, United States.
William K RussellDepartment of Chemistry, Texas A&M University , College Station, Texas 77843, United States.
Doyong KimDepartment of Chemistry, Texas A&M University , College Station, Texas 77843, United States.
Nathan FleerDepartment of Chemistry, Texas A&M University , College Station, Texas 77843, United States.
Steven E EalickDepartment of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14853, United States.
Coran M H WatanabeDepartment of Chemistry, Texas A&M University , College Station, Texas 77843, United States.

Funding

Overall (pp. 40-62)P41GM103485 · NIGMS · CORNELL UNIVERSITY · PI CERIONE, RICHARD A. · 2012 to 2018
$15.5M
Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
CHEMISTRY OF BIOLOGICAL SYSTEMST32GM008500 · NIGMS · CORNELL UNIVERSITY ITHACA · PI LIN, HENING · 1996 to 2020
$5.4M
Pixel Array Detector for X-ray CrystallographyS10RR029205 · NCRR · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2010 to 2010
$1.8M
NCRR NIH HHS S10 RR029205NIGMS NIH HHS P41 GM103403NIGMS NIH HHS P41 GM103485NIGMS NIH HHS T32 GM008500
6 · The paper itself

Abstract

The azinomycins are a family of potent antitumor agents with the ability to form interstrand cross-links with DNA. This study reports on the unusual biosynthetic formation of the 5-methyl naphthoate moiety, which is essential for effective DNA association. While sequence analysis predicts that the polyketide synthase (AziB) catalyzes the formation of this naphthoate, 2-methylbenzoic acid, a truncated single-ring product, is formed instead. We demonstrate that the thioesterase (AziG) acts as a chain elongation and cyclization (CEC) domain and is required for the additional two rounds of chain extension to form the expected product.

Indexed as

Antineoplastic AgentsBacterial ProteinsGlycopeptidesPolyketide SynthasesProtein Structure, TertiaryStreptomycesAntineoplastic AgentsBacterial ProteinsGlycopeptidesPolyketide Synthases

Identifiers

PMID26731610
PMCPMC4738070

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.