Evidence map›Paper›PMID 26731590›Full record

ArticleCellular reprogramming2015

Transcriptome Analysis of Pig In Vivo, In Vitro-Fertilized, and Nuclear Transfer Blastocyst-Stage Embryos Treated with Histone Deacetylase Inhibitors Postfusion and Activation Reveals Changes in the Lysosomal Pathway.

Kristin M Whitworth, Jiude Mao, Kiho Lee, William G Spollen, Melissa S Samuel, Eric M Walters, Lee D Spate, Randall S Prather

Abstract read
In one paragraph

Article in Cellular reprogramming, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Manipulating the Epigenome in Nuclear Transfer Cloning: Where, When and How.International journal of molecular sciences · 2020
    Review
  5. Article
  6. Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Kristin M Whitworth1 Division of Animal Sciences, National Swine Research and Resource Center, University of Missouri , Columbia, MO, 65211.
Jiude Mao1 Division of Animal Sciences, National Swine Research and Resource Center, University of Missouri , Columbia, MO, 65211.
Kiho Lee2 Department of Animal and Poultry Science, Virginia Tech , Blacksburg, VA, 24061.
William G Spollen3 Informatics Research Core Facility, University of Missouri , Columbia, MO, 65211.
Melissa S Samuel1 Division of Animal Sciences, National Swine Research and Resource Center, University of Missouri , Columbia, MO, 65211.
Eric M Walters1 Division of Animal Sciences, National Swine Research and Resource Center, University of Missouri , Columbia, MO, 65211.
Lee D Spate1 Division of Animal Sciences, National Swine Research and Resource Center, University of Missouri , Columbia, MO, 65211.
Randall S Prather1 Division of Animal Sciences, National Swine Research and Resource Center, University of Missouri , Columbia, MO, 65211.
University of Missouri · USVirginia Tech · US

Funding

Resource Core for National Swine Resource and Research Center (NSRRC) Years 21-25U42OD011140 · OD · UNIVERSITY OF MISSOURI-COLUMBIA · PI RANDALL S PRATHER · 2012 to 2026
$26.7M
NIH HHS U42 OD011140
6 · The paper itself

Abstract

Genetically modified pigs are commonly created via somatic cell nuclear transfer (SCNT). Treatment of reconstructed embryos with histone deacetylase inhibitors (HDACi) immediately after activation improves cloning efficiency. The objective of this experiment was to evaluate the transcriptome of SCNT embryos treated with suberoylanilide hydroxamic acid (SAHA), 4-iodo-SAHA (ISAHA), or Scriptaid as compared to untreated SCNT, in vitro-fertilized (IVF), and in vivo (IVV) blastocyst-stage embryos. SAHA (10 μM) had the highest level of blastocyst development at 43.9%, and all treatments except 10 μM ISAHA had the same percentage of blastocyst development as Scriptaid (p<0.05). Two treatments, 1.0 μM ISAHA and 1.0 μM SAHA, had higher mean cell number than No HDACi treatment (p<0.021). Embryo transfers performed with 10 μM SAHA- and 1 μM ISAHA-treated embryos resulted in the birth of healthy piglets. GenBank accession numbers from up- and downregulated transcripts were loaded into the Database for Annotation, Visualization and Integrated Discovery to identify enriched biological themes. HDACi treatment yielded the highest enrichment for transcripts within the Kyoto Encyclopedia of Genes and Genomes (KEGG) Pathway, lysosome. The mean intensity of LysoTracker was lower in IVV embryos compared to IVF and SCNT embryos (p<0.0001). SAHA and ISAHA can successfully be used to create healthy piglets from SCNT.

Indexed as

Fertilization in VitroNuclear Transfer TechniquesTranscriptomeAnimalsBlastocystFemaleHistone Deacetylase InhibitorsHydroxamic AcidsHydroxylaminesLysosomesQuinolinesSus scrofaVorinostatHistone Deacetylase InhibitorsHydroxamic AcidsHydroxylaminesQuinolinesscriptaidVorinostat

Identifiers

PMID26731590
PMCPMC4529055
OpenAlexW1854445143

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.