Evidence map›Paper›PMID 26730810›Full record

ArticleMolecular therapy. Nucleic acids2016

TALENs Facilitate Single-step Seamless SDF Correction of F508del CFTR in Airway Epithelial Submucosal Gland Cell-derived CF-iPSCs.

Shingo Suzuki, R Geoffrey Sargent, Beate Illek, Horst Fischer, Alaleh Esmaeili-Shandiz, Michael J Yezzi, Albert Lee, Yanu Yang, Soya Kim, Peter Renz and 16 more

Open access · goldAbstract read
In one paragraph

Article in Molecular therapy. Nucleic acids, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 41 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Induced pluripotent stem cell-based therapies for organ fibrosis.Frontiers in bioengineering and biotechnology · 2023
    Review
  5. Review
  6. Article
  7. Review
  8. Review
  9. Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. Gene Therapy for Cystic Fibrosis: Progress and Challenges of Genome Editing.International journal of molecular sciences · 2020
    Review
  15. Article
  16. Review
  17. Review
  18. Efficient Gene Editing at Major CFTR Mutation Loci.Molecular therapy. Nucleic acids · 2019
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 6 institutions in 4 countries.

Shingo SuzukiDepartment of Otolaryngology - Head and Neck Surgery, University of California-San Francisco, San Francisco, California, USA.
R Geoffrey SargentDepartment of Otolaryngology - Head and Neck Surgery, University of California-San Francisco, San Francisco, California, USA.
Beate IllekChildrens Hospital Oakland Research Institute, Oakland, California, USA.
Horst FischerChildrens Hospital Oakland Research Institute, Oakland, California, USA.
Alaleh Esmaeili-ShandizDepartment of Otolaryngology - Head and Neck Surgery, University of California-San Francisco, San Francisco, California, USA.
Michael J YezziDepartment of Otolaryngology - Head and Neck Surgery, University of California-San Francisco, San Francisco, California, USA.
Albert LeeDepartment of Otolaryngology - Head and Neck Surgery, University of California-San Francisco, San Francisco, California, USA.
Yanu YangCalifornia Pacific Medical Center Research Institute, San Francisco, California, USA.
Soya KimLiver Center, University of California-San Francisco, San Francisco, California, USA.
Peter RenzDepartment of Otolaryngology - Head and Neck Surgery, University of California-San Francisco, San Francisco, California, USA.
Zhongxia QiDepartment of Laboratory Medicine, University of California-San Francisco, San Francisco, California, USA.
Jingwei YuDepartment of Laboratory Medicine, University of California-San Francisco, San Francisco, California, USA.
Marcus O MuenchDepartment of Laboratory Medicine, University of California-San Francisco, San Francisco, California, USA.
Ashley I BeyerBlood Systems Research Institute, San Francisco, California, USA.
Alessander O GuimarãesBlood Systems Research Institute, San Francisco, California, USA.
Lin YeDepartment of Medicine, University of California-San Francisco, San Francisco, California, USA.
Judy ChangDepartment of Medicine, University of California-San Francisco, San Francisco, California, USA.
Eli J FineDepartment of Biomedical Engineering, Georgia Institute of Technology, Atlanta, Georgia, USA.
Thomas J CradickDepartment of Biomedical Engineering, Georgia Institute of Technology, Atlanta, Georgia, USA.
Gang BaoDepartment of Biomedical Engineering, Georgia Institute of Technology, Atlanta, Georgia, USA.
Meghdad RahdarDepartment of Pediatrics, Stanford University, Stanford, California, USA.
Matthew H PorteusDepartment of Pediatrics, Stanford University, Stanford, California, USA.
Tsuyoshi ShutoDepartment of Molecular Medicine, Graduate School of Pharmaceutical Sciences, Kumamoto University, Kumamoto, Japan.
Hirofumi KaiDepartment of Molecular Medicine, Graduate School of Pharmaceutical Sciences, Kumamoto University, Kumamoto, Japan.
Yuet W KanDepartment of Medicine, University of California-San Francisco, San Francisco, California, USA.
Dieter C GruenertDepartment of Otolaryngology - Head and Neck Surgery, University of California-San Francisco, San Francisco, California, USA.
University of California, San Francisco · USCalifornia Pacific Medical Center · USGeorgia Institute of Technology · USKumamoto University · JPBlood Systems Research Institute · USStanford University · US

Funding

Nanomedicine Center for Nucleoprotein MachinesPN2EY018244 · NEI · RICE UNIVERSITY · PI BAO, GANG · 2006 to 2015
$24.4M
SynthesisP30DK072517 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI VERKMAN, ALAN S · 2005 to 2022
$18.1M
Reprogramming iPS Cells with Exogenous and Endogenous Transcription Factor GenesP01DK088760 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KAN, YUET WAI · 2011 to 2015
$6.5M
BASIC RESEARCH IN HEMATOLOGY AND ONCOLOGYT32DK007636 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SHUMAN, MARC A. · 1989 to 2013
$2.7M
Activating cystic fibrosis transmembrane conductance regulator: the therapeutic potential of RNA directed gene activationR01DK104681 · NIDDK · SCRIPPS RESEARCH INSTITUTE, THE · PI MORRIS, KEVIN V · 2015 to 2019
$1.9M
CHARACTERIZATION OF SFHR MODIFICATION OF GENOMIC HPRTR01GM075111 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GRUENERT, DIETER C · 2007 to 2010
$1.3M
NEI NIH HHS PN2 EY018244NIDDK NIH HHS P01 DK088760NIDDK NIH HHS P30 DK072517NIDDK NIH HHS R01 DK104681NIDDK NIH HHS T32 DK007636NIGMS NIH HHS R01 GM075111
6 · The paper itself

Abstract

Cystic fibrosis (CF) is a recessive inherited disease associated with multiorgan damage that compromises epithelial and inflammatory cell function. Induced pluripotent stem cells (iPSCs) have significantly advanced the potential of developing a personalized cell-based therapy for diseases like CF by generating patient-specific stem cells that can be differentiated into cells that repair tissues damaged by disease pathology. The F508del mutation in airway epithelial cell-derived CF-iPSCs was corrected with small/short DNA fragments (SDFs) and sequence-specific TALENs. An allele-specific PCR, cyclic enrichment strategy gave ~100-fold enrichment of the corrected CF-iPSCs after six enrichment cycles that facilitated isolation of corrected clones. The seamless SDF-based gene modification strategy used to correct the CF-iPSCs resulted in pluripotent cells that, when differentiated into endoderm/airway-like epithelial cells showed wild-type (wt) airway epithelial cell cAMP-dependent Cl ion transport or showed the appropriate cell-type characteristics when differentiated along mesoderm/hematopoietic inflammatory cell lineage pathways.

Identifiers

PMID26730810
PMCPMC5012545
OpenAlexW2231031777

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.