Evidence map›Paper›PMID 26729921›Full record

ArticleRNA (New York, N.Y.)2016

A dual fluorescent reporter for the investigation of methionine mistranslation in live cells.

Ana Cristina Gomes, Anna J Kordala, Rita Strack, Xiaoyun Wang, Renaud Geslain, Kamila Delaney, Wesley C Clark, Robert Keenan, Tao Pan

Abstract read
In one paragraph

Article in RNA (New York, N.Y.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Natural human tRNARNA (New York, N.Y.) · 2025
    Article
  5. Article
  6. Review
  7. Engineered mischarged transfer RNAs for correcting pathogenic missense mutations.Molecular therapy : the journal of the American Society of Gene Therapy · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Review
  16. Review
  17. Article
  18. MS-READ: Quantitative measurement of amino acid incorporation.Biochimica et biophysica acta. General subjects · 2017
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Ana Cristina GomesDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, Illinois 60637, USA.
Anna J KordalaDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, Illinois 60637, USA.
Rita StrackDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, Illinois 60637, USA.
Xiaoyun WangDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, Illinois 60637, USA.
Renaud GeslainDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, Illinois 60637, USA.
Kamila DelaneyDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, Illinois 60637, USA.
Wesley C ClarkDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, Illinois 60637, USA.
Robert KeenanDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, Illinois 60637, USA.
Tao PanDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, Illinois 60637, USA Institute of Biophysical Dynamics, University of Chicago, Chicago, Illinois 60637, USA.

Funding

Mis-translation as a new mechanism of stress response in biologyDP1GM105386 · NIGMS · UNIVERSITY OF CHICAGO · PI PAN, TAO · 2012 to 2015
$3.1M
NCCDPHP CDC HHS DP1GM105386NIGMS NIH HHS DP1 GM105386
6 · The paper itself

Abstract

In mammalian cells under oxidative stress, the methionyl-tRNA synthetase (MetRS) misacylates noncognate tRNAs at frequencies as high as 10% distributed among up to 28 tRNA species. Instead of being detrimental for the cell, misincorporation of methionine residues in the proteome reduces the risk of oxidative damage to proteins, which aids the oxidative stress response. tRNA microarrays have been essential for the detection of the full pattern of misacylated tRNAs, but have limited capacity to investigate the misacylation and mistranslation mechanisms in live cells. Here we develop a dual-fluorescence reporter to specifically measure methionine misincorporation at glutamic acid codons GAA and GAG via tRNA(Glu) mismethionylation in human cells. Our method relies on mutating a specific Met codon in the active site of the fluorescent protein mCherry to a Glu codon that renders mCherry nonfluorescent when translation follows the genetic code. Mistranslation utilizing mismethionylated tRNA(Glu) restores fluorescence in proportion to the amount of misacylated tRNA(Glu). This cellular approach works well for both transient transfection and established stable HEK293 lines. It is rapid, straightforward, and well suited for high-throughput activity analysis under a wide range of physiological conditions. As a proof of concept, we apply this method to characterize the effect of human tRNA(Glu) isodecoders on mistranslation and discuss the implications of our findings.

Indexed as

Fluorescent DyesProtein BiosynthesisBase SequenceHumansMethionineMolecular Sequence DataNucleic Acid ConformationRNA, Transfer, GluFluorescent DyesMethionineRNA, Transfer, GluFACSfluorescent proteinmistranslationreportertRNA isodecoder

Identifiers

PMID26729921
PMCPMC4748823

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.