Evidence map›Paper›PMID 26729507›Full record

ArticleNature communications2016

Structure of the polyisoprenyl-phosphate glycosyltransferase GtrB and insights into the mechanism of catalysis.

Chiara Ardiccioni, Oliver B Clarke, David Tomasek, Habon A Issa, Desiree C von Alpen, Heather L Pond, Surajit Banerjee, Kanagalaghatta R Rajashankar, Qun Liu, Ziqiang Guan and 8 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 47 citations in OpenAlex.

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  4. Mass Photometry Analysis of Membrane Proteins in Detergent Micelles.Methods in molecular biology (Clifton, N.J.) · 2026
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  12. Three-component systems represent a common pathway for extracytoplasmic addition of pentofuranose sugars into bacterial glycans.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. International journal of molecular sciences · 2021
    Article
  18. Article
  19. Nucleotide Sugars in Chemistry and Biology.Molecules (Basel, Switzerland) · 2020
    Review
  20. Lipopolysaccharide O-antigens-bacterial glycans made to measure.The Journal of biological chemistry · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 2 countries.

Chiara ArdiccioniDepartment of Physiology and Cellular Biophysics, Columbia University, New York, New York 10032, USA.
Oliver B ClarkeDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, New York 10032, USA.
David TomasekDepartment of Physiology and Cellular Biophysics, Columbia University, New York, New York 10032, USA.
Habon A IssaDepartment of Pharmacology and Physiology, George Washington University, Washington, District of Columbia 20037, USA.
Desiree C von AlpenDepartment of Pharmacology and Physiology, George Washington University, Washington, District of Columbia 20037, USA.
Heather L PondDepartment of Pharmacology and Physiology, George Washington University, Washington, District of Columbia 20037, USA.
Surajit BanerjeeNE-CAT and Department of Chemistry and Chemical Biology, Cornell University, Argonne National Laboratory, Argonne, Illinois 60439, USA.
Kanagalaghatta R RajashankarNE-CAT and Department of Chemistry and Chemical Biology, Cornell University, Argonne National Laboratory, Argonne, Illinois 60439, USA.
Qun LiuNew York Structural Biology Center, X4 Beamlines, Brookhaven National Laboratory, Upton, New York 11973, USA.
Ziqiang GuanDepartment of Biochemistry, Duke University Medical Center, Durham, North Carolina 27710, USA.
Chijun LiDepartment of Biochemistry, Duke University Medical Center, Durham, North Carolina 27710, USA.
Brian KlossNew York Consortium on Membrane Protein Structure, New York Structural Biology Center, New York, New York 10027, USA.
Renato BruniNew York Consortium on Membrane Protein Structure, New York Structural Biology Center, New York, New York 10027, USA.
Edda KloppmannDepartment of Informatics, Bioinformatics and Computational Biology, Garching 85748, Germany.
Burkhard RostDepartment of Informatics, Bioinformatics and Computational Biology, Garching 85748, Germany.
M Chiara ManziniDepartment of Pharmacology and Physiology, George Washington University, Washington, District of Columbia 20037, USA.
Lawrence ShapiroDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, New York 10032, USA.
Filippo ManciaDepartment of Physiology and Cellular Biophysics, Columbia University, New York, New York 10032, USA.
Columbia University · USGeorge Washington University · USNew York Structural Biology Center · USArgonne National Laboratory · USDuke Medical Center · USInstitute for Advanced Study · DETechnical University of Munich · DE

Funding

Y-FAMILY POLYMERASES AND CO-FACTORS IN TRANSLESION REPLICATIONP41RR015301 · NCRR · CORNELL UNIVERSITY ITHACA · PI DONG, ZIGANG · 2001 to 2011
$28.2M
Structural Genomics on Membrane ProteinsU54GM095315 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI ROST, BURKHARD · 2010 to 2014
$15.2M
Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
Lipid biosynthesis and modification by integral-membrane enzymesR01GM111980 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MANCIA, FILIPPO · 2015 to 2018
$2.2M
NCRR NIH HHS P41 RR015301NIGMS NIH HHS P41 GM103403NIGMS NIH HHS R01 GM111980NIGMS NIH HHS U54 GM095315
6 · The paper itself

Abstract

The attachment of a sugar to a hydrophobic polyisoprenyl carrier is the first step for all extracellular glycosylation processes. The enzymes that perform these reactions, polyisoprenyl-glycosyltransferases (PI-GTs) include dolichol phosphate mannose synthase (DPMS), which generates the mannose donor for glycosylation in the endoplasmic reticulum. Here we report the 3.0 Å resolution crystal structure of GtrB, a glucose-specific PI-GT from Synechocystis, showing a tetramer in which each protomer contributes two helices to a membrane-spanning bundle. The active site is 15 Å from the membrane, raising the question of how water-soluble and membrane-embedded substrates are brought into apposition for catalysis. A conserved juxtamembrane domain harbours disease mutations, which compromised activity in GtrB in vitro and in human DPM1 tested in zebrafish. We hypothesize a role of this domain in shielding the polyisoprenyl-phosphate for transport to the active site. Our results reveal the basis of PI-GT function, and provide a potential molecular explanation for DPM1-related disease.

Indexed as

AnimalsAnimals, Genetically ModifiedGene Expression Regulation, BacterialGene Expression Regulation, EnzymologicGlycosyltransferasesHumansMannosyltransferasesModels, MolecularProtein ConformationSynechocystisZebrafishdolichyl-phosphate beta-D-mannosyltransferaseGlycosyltransferasesMannosyltransferases

Identifiers

PMID26729507
PMCPMC4728340
OpenAlexW2232899026

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.