Evidence map›Paper›PMID 26729235›Full record

ArticleScientific reports2016

Integration of genomic, transcriptomic and proteomic data identifies two biologically distinct subtypes of invasive lobular breast cancer.

Magali Michaut, Suet-Feung Chin, Ian Majewski, Tesa M Severson, Tycho Bismeijer, Leanne de Koning, Justine K Peeters, Philip C Schouten, Oscar M Rueda, Astrid J Bosma and 36 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 106 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
106citing papers in PubMed, 1 pooled it
9.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

106 citing papers in PubMed, 1 synthesis or guideline pooled it, 174 citations in OpenAlex.

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  5. Toward targeted therapeutics for lobular breast cancer.The Journal of clinical investigation · 2026
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46 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

46 authors at 14 institutions in 7 countries.

Magali MichautDivision of Molecular Carcinogenesis, The Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam, The Netherlands.
Suet-Feung ChinCancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge, CB2 0RE, UK.
Ian MajewskiDivision of Molecular Carcinogenesis, The Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam, The Netherlands.
Tesa M SeversonDivision of Molecular Pathology, The Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam, The Netherlands.
Tycho BismeijerDivision of Molecular Carcinogenesis, The Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam, The Netherlands.
Leanne de KoningTranslational Research Department, Institut Curie, 26 rue d'Ulm, 75248 Paris cedex 05, France.
Justine K PeetersAgendia NV, Science Park 406, 1098 XH Amsterdam, The Netherlands.
Philip C SchoutenDivision of Molecular Pathology, The Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam, The Netherlands.
Oscar M RuedaCancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge, CB2 0RE, UK.
Astrid J BosmaDivision of Molecular Carcinogenesis, The Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam, The Netherlands.
Finbarr TarrantCancer Biology and Therapeutics Laboratory, UCD School of Biomolecular and Biomedical Science, UCD Conway Institute, University College Dublin, Belfield, Dublin 4, Ireland.
Yue FanCancer Biology and Therapeutics Laboratory, UCD School of Biomolecular and Biomedical Science, UCD Conway Institute, University College Dublin, Belfield, Dublin 4, Ireland.
Beilei HeTranslational Research Department, Institut Curie, 26 rue d'Ulm, 75248 Paris cedex 05, France.
Zheng XueDivision of Molecular Carcinogenesis, The Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam, The Netherlands.
Lorenza MittempergherDivision of Molecular Carcinogenesis, The Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam, The Netherlands.
Roelof J C KluinGenomic Core Facility, The Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam, The Netherlands.
Jeroen HeijmansAgendia NV, Science Park 406, 1098 XH Amsterdam, The Netherlands.
Mireille SnelAgendia NV, Science Park 406, 1098 XH Amsterdam, The Netherlands.
Bernard PereiraCancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge, CB2 0RE, UK.
Andreas SchlickerDivision of Molecular Carcinogenesis, The Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam, The Netherlands.
Elena ProvenzanoCambridge Experimental Cancer Medicine Centre (ECMR) and NIHR Cambridge Biomedical Research Centre, Cambridge University Hospitals NHS Foundation Trust, Cambridge CB2 0QQ, UK.
Hamid Raza AliCancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge, CB2 0RE, UK.
Alexander GaberDepartment of Clinical Sciences Lund, Division of Oncology and Pathology, Lund University, SE-221 85 Lund, Sweden.
Gillian O'HurleyOncoMark Limited, NovaUCD, Belfield Innovation Park, Dublin 4, Ireland.
Sophie LehnDepartment of Clinical Sciences Lund, Division of Oncology and Pathology, Lund University, SE-221 85 Lund, Sweden.
Jettie J F MurisDivision of Molecular Pathology, The Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam, The Netherlands.
Jelle WesselingDivision of Molecular Pathology, The Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam, The Netherlands.
Elaine KayDepartment of Pathology, RCSI ERC, Beaumont Hospital, Dublin 9, Ireland.
Stephen John SammutCancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge, CB2 0RE, UK.
Helen A BardwellCancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge, CB2 0RE, UK.
Aurélie S BarbetTranslational Research Department, Institut Curie, 26 rue d'Ulm, 75248 Paris cedex 05, France.
Floriane BardTranslational Research Department, Institut Curie, 26 rue d'Ulm, 75248 Paris cedex 05, France.
Caroline LecerfTranslational Research Department, Institut Curie, 26 rue d'Ulm, 75248 Paris cedex 05, France.
Darran P O'ConnorCancer Biology and Therapeutics Laboratory, UCD School of Biomolecular and Biomedical Science, UCD Conway Institute, University College Dublin, Belfield, Dublin 4, Ireland.
Daniël J VisDivision of Molecular Carcinogenesis, The Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam, The Netherlands.
Cyril H BenesMassachusetts General Hospital Cancer Center, Harvard Medical School, Charlestown, Massachusetts 02129, USA.
Ultan McDermottCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton CB10 1SA, UK.
Mathew J GarnettCancer Genome Project, Wellcome Trust Sanger Institute, Hinxton CB10 1SA, UK.
Iris M SimonAgendia NV, Science Park 406, 1098 XH Amsterdam, The Netherlands.
Karin JirströmDepartment of Clinical Sciences Lund, Division of Oncology and Pathology, Lund University, SE-221 85 Lund, Sweden.
Thierry DuboisTranslational Research Department, Institut Curie, 26 rue d'Ulm, 75248 Paris cedex 05, France.
Sabine C LinnDivision of Molecular Pathology, The Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam, The Netherlands.
William M GallagherCancer Biology and Therapeutics Laboratory, UCD School of Biomolecular and Biomedical Science, UCD Conway Institute, University College Dublin, Belfield, Dublin 4, Ireland.
Lodewyk F A WesselsDivision of Molecular Carcinogenesis, The Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam, The Netherlands.
Carlos CaldasCancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge, CB2 0RE, UK.
Rene BernardsDivision of Molecular Carcinogenesis, The Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam, The Netherlands.
The Netherlands Cancer Institute · NLInstitut Curie · FRAgendia (Netherlands) · NLCancer Research UK · GBLund University · SEOncoMark (Ireland) · IEUniversity of Cambridge · GBUniversity College Dublin · IEWellcome Sanger Institute · GBBeaumont Hospital · IECambridge University Hospitals NHS Foundation Trust · GBDelft University of Technology · NLMassachusetts General Hospital · USUniversity Medical Center Utrecht · NL

Funding

Cancer Research UK 16942Wellcome Trust 102696
6 · The paper itself

Abstract

Invasive lobular carcinoma (ILC) is the second most frequently occurring histological breast cancer subtype after invasive ductal carcinoma (IDC), accounting for around 10% of all breast cancers. The molecular processes that drive the development of ILC are still largely unknown. We have performed a comprehensive genomic, transcriptomic and proteomic analysis of a large ILC patient cohort and present here an integrated molecular portrait of ILC. Mutations in CDH1 and in the PI3K pathway are the most frequent molecular alterations in ILC. We identified two main subtypes of ILCs: (i) an immune related subtype with mRNA up-regulation of PD-L1, PD-1 and CTLA-4 and greater sensitivity to DNA-damaging agents in representative cell line models; (ii) a hormone related subtype, associated with Epithelial to Mesenchymal Transition (EMT), and gain of chromosomes 1q and 8q and loss of chromosome 11q. Using the somatic mutation rate and eIF4B protein level, we identified three groups with different clinical outcomes, including a group with extremely good prognosis. We provide a comprehensive overview of the molecular alterations driving ILC and have explored links with therapy response. This molecular characterization may help to tailor treatment of ILC through the application of specific targeted, chemo- and/or immune-therapies.

Indexed as

GenomicsProteomeTranscriptomeBiomarkers, TumorBreast NeoplasmsCarcinoma, LobularCluster AnalysisDNA-Binding ProteinsEpithelial-Mesenchymal TransitionFemaleGene Expression ProfilingHumansImmunohistochemistryMutation RatePolymorphism, Single NucleotidePrognosisBiomarkers, TumorDNA-Binding ProteinsELF4 protein, humanProteomeTranscription Factors

Identifiers

PMID26729235
PMCPMC4700448
OpenAlexW2231812902

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.