Evidence map›Paper›PMID 26729140›Full record

ArticleMarine drugs2015

Specific Metabolites in a Phaeodactylum tricornutum Strain Isolated from Western Norwegian Fjord Water.

Siv Kristin Prestegard, Svein Rune Erga, Pia Steinrücken, Svein Are Mjøs, Gjert Knutsen, Jens Rohloff

Open access · goldAbstract read
In one paragraph

Article in Marine drugs, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
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  5. Comparative Proteomic Analysis of the DiatomFrontiers in plant science · 2022
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  6. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Siv Kristin PrestegardBergen Marine Biobank, Department of Biology, University of Bergen, Thormøhlensgate 53A/B, N-5020 Bergen, Norway. siv.prestegard@uni.no.
Svein Rune ErgaDepartment of Biology, University of Bergen, Thormøhlensgate 53AB, N-5020 Bergen, Norway. svein.erga@uib.no.
Pia SteinrückenDepartment of Biology, University of Bergen, Thormøhlensgate 53AB, N-5020 Bergen, Norway. pia.steinrucken@uib.no.
Svein Are MjøsDepartment of Chemistry, University of Bergen, Allégaten 42, N-5020 Bergen, Norway. svein.mjos@uib.no.
Gjert KnutsenDepartment of Biology, University of Bergen, Thormøhlensgate 53AB, N-5020 Bergen, Norway. gjert.knutsen@uib.no.
Jens RohloffDepartment of Biology, Norwegian University of Science and Technology, N-7491 Trondheim, Norway. jens.rohloff@ntnu.no.
University of Bergen · NONorwegian University of Science and Technology · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have searched for special characteristics in growth, protein expression, fatty acids and volatile organic compounds (VOCs) in a local Phaeodactylum tricornutum Bohlin strain (Bergen Marine Biobank), by comparing it with a common accession strain (CCAP). Differences in growth and expressed proteins were detected between the BMB strain and the CCAP strain, and the BMB strain reached the highest cell densities under the given growth conditions. Fatty acid (FA) analyses showed highest relative eicosapentaenoic acid (EPA) levels in the exponential phase (25.73% and 28.31%), and highest levels of palmitoleic acid (16:1 n-7) in the stationary phase (46.36% and 43.66%) in the BMB and CCAP strain, respectively. The most striking finding of the VOCs analyses was the relatively high levels of ectocarpene, 6-((1E)-butenyl)-1,4-cycloheptadiene, hormosirene, and desmarestene and structurally related compounds, which were exclusively detected in the BMB strain. Many of the VOCs detected in the CCAP and, in particular, in the BMB strain have been reported as antimicrobial agents. We suggest that the array of pheromones and antimicrobial substances could be part of an allelopathic strategy of the BMB strain, dominated by oval cells, thus reflecting the benthic life stage of this morphological form. These findings show the potential for bioactive metabolites in the BMB strain.

Indexed as

DiatomsEstuariesHumansNorwaySeawaterVolatile Organic CompoundsWater MicrobiologyVolatile Organic Compoundsectocarpeneeicosapentaenoic acid (EPA)fatty acidshormosirenePhaeodactylum tricornutumtwo-dimensional gel electrophoresis (2DGE)volatile organic compounds (VOCs)

Identifiers

PMID26729140
PMCPMC4728506
OpenAlexW2207243468

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.