Evidence map›Paper›PMID 26729109›Full record

ArticleInternational journal of molecular sciences2015

Molecular Evolution of Aralkylamine N-Acetyltransferase in Fish: A Genomic Survey.

Jia Li, Xinxin You, Chao Bian, Hui Yu, Steven L Coon, Qiong Shi

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
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  3. Review
  4. Article
  5. Review
  6. Article
  7. Review
  8. Mudskippers and Their Genetic Adaptations to an Amphibious Lifestyle.Animals : an open access journal from MDPI · 2018
    Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Jia LiBGI Education Center, University of Chinese Academy of Sciences, Shenzhen 518083, China. lijia1@genomics.cn.
Xinxin YouShenzhen Key Lab of Marine Genomics, Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals, BGI, Shenzhen 518083, China. youxinxin@genomics.cn.
Chao BianShenzhen Key Lab of Marine Genomics, Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals, BGI, Shenzhen 518083, China. bianchao@genomics.cn.
Hui YuBGI Education Center, University of Chinese Academy of Sciences, Shenzhen 518083, China. yuhui@genomics.cn.
Steven L CoonMolecular Genomics Laboratory, National Institutes of Health, Bethesda, MD 20892, USA. coons@mail.nih.gov.
Qiong ShiBGI Education Center, University of Chinese Academy of Sciences, Shenzhen 518083, China. shiqiong@genomics.cn.
BGI Group (China) · CNNational Institutes of Health · US

Funding

Molecular Genomics Sequencing Core FacilityZICHD008958 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI MAHADEVAN, VIVEK · 2016 to 2025
$19.0M
Intramural NIH HHS
6 · The paper itself

Abstract

All living organisms synchronize biological functions with environmental changes; melatonin plays a vital role in regulating daily and seasonal variations. Due to rhythmic activity of the timezyme aralkylamine N-acetyltransferase (AANAT), the blood level of melatonin increases at night and decreases during daytime. Whereas other vertebrates have a single form of AANAT, bony fishes possess various isoforms of aanat genes, though the reasons are still unclear. Here, we have taken advantage of multiple unpublished teleost aanat sequences to explore and expand our understanding of the molecular evolution of aanat in fish. Our results confirm that two rounds of whole-genome duplication (WGD) led to the existence of three fish isoforms of aanat, i.e., aanat1a, aanat1b, and aanat2; in addition, gene loss led to the absence of some forms from certain special fish species. Furthermore, we suggest the different roles of two aanat1s in amphibious mudskippers, and speculate that the loss of aanat1a, may be related to terrestrial vision change. Several important sites of AANAT proteins and regulatory elements of aanat genes were analyzed for structural comparison and functional forecasting, respectively, which provides insights into the molecular evolution of the differences between AANAT1 and AANAT2.

Indexed as

Evolution, MolecularAmino Acid SequenceAnimalsArylalkylamine N-AcetyltransferaseFishesFish ProteinsGene DosageGenomeMolecular Sequence DataPhylogenyProtein IsoformsSequence AlignmentArylalkylamine N-AcetyltransferaseFish ProteinsProtein Isoformsaralkylamine N-acetyltransferasegene lossmolecular evolutionphylogenetic analysissyntenyWhole-Genome Duplication (WGD)

Identifiers

PMID26729109
PMCPMC4730296
OpenAlexW2200779316

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.