Evidence map›Paper›PMID 26729047›Full record

ArticleBMC genomics2016

Genome sequencing and secondary metabolism of the postharvest pathogen Penicillium griseofulvum.

Houda Banani, Marina Marcet-Houben, Ana-Rosa Ballester, Pamela Abbruscato, Luis González-Candelas, Toni Gabaldón, Davide Spadaro

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
19.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 88 citations in OpenAlex.

  1. Article
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  4. A Structural In Silico Analysis of the Immunogenicity of L-Asparaginase fromInternational journal of molecular sciences · 2024
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  6. Aggressiveness and Patulin Production inPlants (Basel, Switzerland) · 2023
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  7. Review
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  10. Temporal dynamics of the chicken mycobiome.Frontiers in physiology · 2022
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  11. Genomic Analyses ofJournal of fungi (Basel, Switzerland) · 2021
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  12. Article
  13. Draft Genome Sequences ofMicrobiology resource announcements · 2021
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  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Mycobiome in the Gut: A Multiperspective Review.Mediators of inflammation · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Houda BananiDiSAFA - Dept. Agricultural, Forestry and Food Sciences and AGROINNOVA - Centre of Competence for the Innovation in the Agroenvironmental Sector, University of Torino, Largo Paolo Braccini 2, I-10095 Grugliasco, Torino, Italy. houda.banani@unito.it.
Marina Marcet-HoubenBioinformatics and Genomics Programme. Centre for Genomic Regulation (CRG), Dr. Aiguader 88, 08003, Barcelona, Spain. Marina.Marcet-Houben@crg.eu.
Ana-Rosa BallesterInstituto de Agroquímica y Tecnología de Alimentos (IATA-CSIC), Avda. Agustin Escardino 7, Paterna, Valencia, 46980, Spain. ballesterar@iata.csic.es.
Pamela AbbruscatoBioeconomy Unit, Parco Tecnologico Padano, via Einstein, 26900, Lodi, Italy. pamela.abbruscato@ptp.it.
Luis González-CandelasInstituto de Agroquímica y Tecnología de Alimentos (IATA-CSIC), Avda. Agustin Escardino 7, Paterna, Valencia, 46980, Spain. lgonzalez@iata.csic.es.
Toni GabaldónBioinformatics and Genomics Programme. Centre for Genomic Regulation (CRG), Dr. Aiguader 88, 08003, Barcelona, Spain. tgabaldon@crg.es.
Davide SpadaroDiSAFA - Dept. Agricultural, Forestry and Food Sciences and AGROINNOVA - Centre of Competence for the Innovation in the Agroenvironmental Sector, University of Torino, Largo Paolo Braccini 2, I-10095 Grugliasco, Torino, Italy. davide.spadaro@unito.it.
Instituto de Agroquímica y Tecnología de Alimentos · ESUniversity of Turin · ITCentre for Genomic Regulation · ESParco Tecnologico Padano · ITPompeu Fabra University · ES

Funding

European Research Council 310325
6 · The paper itself

Abstract

backgroundPenicillium griseofulvum is associated in stored apples with blue mould, the most important postharvest disease of pome fruit. This pathogen can simultaneously produce both detrimental and beneficial secondary metabolites (SM). In order to gain insight into SM synthesis in P. griseofulvum in vitro and during disease development on apple, we sequenced the genome of P. griseofulvum strain PG3 and analysed important SM clusters.

resultsPG3 genome sequence (29.3 Mb) shows that P. griseofulvum branched off after the divergence of P. oxalicum but before the divergence of P. chrysogenum. Genome-wide analysis of P. griseofulvum revealed putative gene clusters for patulin, griseofulvin and roquefortine C biosynthesis. Furthermore, we quantified the SM production in vitro and on apples during the course of infection. The expression kinetics of key genes of SM produced in infected apple were examined. We found additional SM clusters, including those potentially responsible for the synthesis of penicillin, yanuthone D, cyclopiazonic acid and we predicted a cluster putatively responsible for the synthesis of chanoclavine I.

conclusionsThese findings provide relevant information to understand the molecular basis of SM biosynthesis in P. griseofulvum, to allow further research directed to the overexpression or blocking the synthesis of specific SM.

Indexed as

Amino Acid SequenceBase SequenceChromosome MappingFruitMalusMultigene FamilyPatulinPenicilliumPhylogenyPlant DiseasesSecondary MetabolismSpecies SpecificityPatulin

Identifiers

PMID26729047
PMCPMC4700700
OpenAlexW2223385685

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.