Evidence map›Paper›PMID 26729044›Full record

ArticleAnalytical chemistry2016

Online Hydrophobic Interaction Chromatography-Mass Spectrometry for Top-Down Proteomics.

Bifan Chen, Ying Peng, Santosh G Valeja, Lichen Xiu, Andrew J Alpert, Ying Ge

Abstract read
In one paragraph

Article in Analytical chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Top-down proteomics.Nature reviews. Methods primers · 2024
    Article
  8. Multidimensional Separations in Top-Down Proteomics.Analytical science advances · 2023
    Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Novel Strategies to Address the Challenges in Top-Down Proteomics.Journal of the American Society for Mass Spectrometry · 2021
    Review
  14. Review
  15. Article
  16. Review
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Bifan ChenDepartment of Chemistry, University of Wisconsin-Madison , Madison, Wisconsin, United States.
Ying PengDepartment of Cell and Regenerative Biology, University of Wisconsin-Madison , Madison, Wisconsin, United States.
Santosh G ValejaDepartment of Cell and Regenerative Biology, University of Wisconsin-Madison , Madison, Wisconsin, United States.
Lichen XiuDepartment of Chemistry, University of Wisconsin-Madison , Madison, Wisconsin, United States.
Andrew J AlpertDepartment of Cell and Regenerative Biology, University of Wisconsin-Madison , Madison, Wisconsin, United States.
Ying GeDepartment of Chemistry, University of Wisconsin-Madison , Madison, Wisconsin, United States.

Funding

Deciphering Myofilament Modifications in Ischemic CardiomyopathyR01HL109810 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI GE, YING · 2013 to 2024
$3.5M
Top Down Proteomics Of Myofilaments In Heart FailureR01HL096971 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI GE, YING · 2011 to 2021
$3.3M
Enabling Top-Down Proteomics through Materials Chemistry and NanotechnologyR01GM117058 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI GE, YING, JIN, SONG · 2015 to 2023
$2.7M
Ultra High Resolution Mass Spectrometer for Biomedical ResearchS10OD018475 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI GE, YING · 2015 to 2015
$2.0M
NHLBI NIH HHS R01 HL096971NHLBI NIH HHS R01HL096971NHLBI NIH HHS R01 HL109810NHLBI NIH HHS R01HL109810NIGMS NIH HHS R01GM11705NIGMS NIH HHS R01 GM117058NIH HHS S10OD01847NIH HHS S10 OD018475
6 · The paper itself

Abstract

Recent progress in top-down proteomics has led to a demand for mass spectrometry (MS)-compatible chromatography techniques to separate intact proteins using volatile mobile phases. Conventional hydrophobic interaction chromatography (HIC) provides high-resolution separation of proteins under nondenaturing conditions but requires high concentrations of nonvolatile salts. Herein, we introduce a series of more-hydrophobic HIC materials that can retain proteins using MS-compatible concentrations of ammonium acetate. The new HIC materials appear to function as a hybrid form of conventional HIC and reverse phase chromatography. The function of the salt seems to be preserving protein structure rather than promoting retention. Online HIC-MS is feasible for both qualitative and quantitative analysis. This is demonstrated with standard proteins and a complex cell lysate. The mass spectra of proteins from the online HIC-MS exhibit low charge-state distributions, consistent with those commonly observed in native MS. Furthermore, HIC-MS can chromatographically separate proteoforms differing by minor modifications. Hence, this new HIC-MS combination is promising for top-down proteomics.

Indexed as

Hydrophobic and Hydrophilic InteractionsInternetMass SpectrometryAnimalsAprotininCattleChickensChromatographyChymotrypsinogenHorsesLactoglobulinsMuramidaseProteomicsRibonuclease, PancreaticTrypsinogenAprotininChymotrypsinogenLactoglobulinsMuramidaseRibonuclease, PancreaticTrypsinogen

Identifiers

PMID26729044
PMCPMC4947469

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.