Evidence map›Paper›PMID 26728461›Full record

ArticleThe Journal of biological chemistry2016

Glu-311 in External Loop 4 of the Sodium/Proline Transporter PutP Is Crucial for External Gate Closure.

Susanne Bracher, Kamila Guérin, Yevhen Polyhach, Gunnar Jeschke, Sophie Dittmer, Sabine Frey, Maret Böhm, Heinrich Jung

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. [Nan fang yi ke da xue xue bao = Journal of Southern Medical University · 2025
    Article
  2. Review
  3. Heteromeric Solute Carriers: Function, Structure, Pathology and Pharmacology.Advances in experimental medicine and biology · 2021
    Review
  4. The allosteric mechanism of substrate-specific transport in SLC6 is mediated by a volumetric sensor.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  5. Role of Proline in Pathogen and Host Interactions.Antioxidants & redox signaling · 2019
    Review
  6. Article
  7. MMM: A toolbox for integrative structure modeling.Protein science : a publication of the Protein Society · 2018
    Article
  8. Article
  9. Osmolyte transport inWorld journal of clinical infectious diseases
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Susanne BracherFrom the Department of Biology 1, Division of Microbiology, Ludwig Maximilians University Munich, Grosshaderner Strasse 2-4, 82152 Martinsried, Germany and.
Kamila Guérinthe ETH Zurich, Laboratory of Physical Chemistry, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland.
Yevhen Polyhachthe ETH Zurich, Laboratory of Physical Chemistry, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland.
Gunnar Jeschkethe ETH Zurich, Laboratory of Physical Chemistry, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland.
Sophie DittmerFrom the Department of Biology 1, Division of Microbiology, Ludwig Maximilians University Munich, Grosshaderner Strasse 2-4, 82152 Martinsried, Germany and.
Sabine FreyFrom the Department of Biology 1, Division of Microbiology, Ludwig Maximilians University Munich, Grosshaderner Strasse 2-4, 82152 Martinsried, Germany and.
Maret BöhmFrom the Department of Biology 1, Division of Microbiology, Ludwig Maximilians University Munich, Grosshaderner Strasse 2-4, 82152 Martinsried, Germany and.
Heinrich JungFrom the Department of Biology 1, Division of Microbiology, Ludwig Maximilians University Munich, Grosshaderner Strasse 2-4, 82152 Martinsried, Germany and hjung@lmu.de.

Funding

Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
NIGMS NIH HHS P41 GM103311
6 · The paper itself

Abstract

The available structural information on LeuT and structurally related transporters suggests that external loop 4 (eL4) and the outer end of transmembrane domain (TM) 10' participate in the reversible occlusion of the outer pathway to the solute binding sites. Here, the functional significance of eL4 and the outer region of TM10' are explored using the sodium/proline symporter PutP as a model. Glu-311 at the tip of eL4, and various amino acids around the outer end of TM10' are identified as particularly crucial for function. Substitutions at these sites inhibit the transport cycle, and affect in part ligand binding. In addition, changes at selected sites induce a global structural alteration in the direction of an outward-open conformation. It is suggested that interactions between the tip of eL4 and the peptide backbone at the end of TM10' participate in coordinating conformational alterations underlying the alternating access mechanism of transport. Together with the structural information on LeuT-like transporters, the results further specify the idea that common design and functional principles are maintained across different transport families.

Indexed as

Molecular Dynamics SimulationAmino Acid SequenceAmino Acid Transport Systems, NeutralEscherichia coliEscherichia coli ProteinsGlutamineMolecular Sequence DataProtein Structure, TertiarySymportersAmino Acid Transport Systems, NeutralEscherichia coli ProteinsGlutaminePutP protein, E coliSymportersamino acid transportelectron paramagnetic resonance (EPR)membrane proteinprolineprotein chemistryprotein conformationPutPsecondary transportsolute/sodium symportspin labeling

Identifiers

PMID26728461
PMCPMC4777837

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.