ArticleMolecular genetics and genomics : MGG2016
Dynamic transcriptome analysis reveals AP2/ERF transcription factors responsible for cold stress in rapeseed (Brassica napus L.).
Article in Molecular genetics and genomics : MGG, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
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30 citing papers in PubMed.
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- Molecular Pathways Associated with Cold Tolerance in Grafted Cucumber (Plants (Basel, Switzerland) · 2025Article
- Drought Stress in Roses: A Comprehensive Review of Morphophysiological, Biochemical, and Molecular Responses.International journal of molecular sciences · 2025Review
- Genome-Wide Identification and Functional Analysis ofPlants (Basel, Switzerland) · 2025Article
- Genome-wide identification and comprehensive analysis of the AP2/ERF gene family in Prunus sibirica under low-temperature stress.BMC plant biology · 2024Article
- Comparative Metabolome and Transcriptome Analysis of Rapeseed (Plants (Basel, Switzerland) · 2024Article
- Comprehensive analysis of pepper (Capsicum annuum) RAV genes family and functional identification of CaRAV1 under chilling stress.BMC genomics · 2024Article
- Molecular identification and functional characterization of a transcription factor GeRAV1 from Gelsemium elegans.BMC genomics · 2024Article
- Salicylic acid-mitigates abiotic stress toleranceFrontiers in plant science · 2023Article
- A De Novo Transcriptome Analysis Identifies Cold-Responsive Genes in the Seeds ofBioMed research international · 2022Article
- Genome-wide transcriptome profiling revealed biological macromolecules respond to low temperature stress inFrontiers in plant science · 2022Article
- Differential alternative splicing genes and isoform co-expression networks ofFrontiers in plant science · 2022Article
- Multi-Omics Analysis Reveals ThatFrontiers in plant science · 2022Article
- Whole-genome characterization of Rosa chinensis AP2/ERF transcription factors and analysis of negative regulator RcDREB2B in Arabidopsis.BMC genomics · 2021Article
- Omics: The way forward to enhance abiotic stress tolerance inGM crops & food · 2021Review
- The HalophyteFrontiers in plant science · 2021Article
- Comparative transcriptome analysis of MeJA-responsive AP2/ERF transcription factors involved in notoginsenosides biosynthesis.3 Biotech · 2020Article
- Genome-wide identification of cold responsive transcription factors in Brassica napus L.BMC plant biology · 2020Article
- Expression of ThreeFrontiers in plant science · 2020Article
- Article
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Authors and funding
7 authors.
Funding
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Abstract
The APETALA2/ethylene response factor (AP2/ERF) transcription factor (TF) superfamily plays an important regulatory role in signal transduction of the plant responses to various stresses including low temperature. Significant progress has been made in understanding the mechanism of cold resistance in Brassica napus, an important oilseed crop. However, comprehensive studies on the induction and activity of these TFs under low temperature have been lacking. In this study, 132 AP2/ERF genes were identified by transcriptome sequencing of rapeseed leaves exposed to 0, 2, 6, 12, and 24 h of low (4 °C) temperature stress. The genes were classified into 4 subfamilies (AP2, DREB, ERF, and RAV) and 13 subgroups, among which the DREB subfamily and ERF subfamily contained 114 genes, no genes were assigned to soloist or DREB A3 subgroups. One hundred and eighteen genes were located on chromosomes A1 to C9. GO functional analysis and promoter sequence analysis revealed that these genes are involved in many molecular pathways that may enhance cold resistance in plants, such as the low-temperature responsiveness, methyl jasmonate, abscisic acid, and ethylene-responsiveness pathways. Their expression patterns revealed dynamic control at different times following initiation of cold stress; the RAV and DREB subfamilies were expressed at the early stage of cold stress, whereas the AP2 subfamily was expressed later. Quantitative PCR analyses of 13 cold-induced AP2/ERF TFs confirmed the accuracy of above results. This study is the first dynamic analysis of the AP2/ERF TFs responsible for cold stress in rapeseed. These findings will serve as a reference for future functional research on transcription in rapeseed.
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