Evidence map›Paper›PMID 26728150›Full record

ArticleBMC plant biology2016

Reduced expression of AtNUP62 nucleoporin gene affects auxin response in Arabidopsis.

Martin Boeglin, Anja Thoe Fuglsang, Doan-Trung Luu, Hervé Sentenac, Isabelle Gaillard, Isabelle Chérel

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
5.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 28 citations in OpenAlex.

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  5. CPR5-mediated nucleo-cytoplasmic localization of IAA12 and IAA19 controls lateral root development during abiotic stress.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  6. Article
  7. Function of Nuclear Pore Complexes in Regulation of Plant Defense Signaling.International journal of molecular sciences · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Martin BoeglinBiochimie et Physiologie Moléculaire des Plantes, CNRS/INRA/SupAgro/UM2, 2 place Viala, 34060, Montpellier cedex, France. boeglin@supagro.inra.fr.
Anja Thoe FuglsangBiochimie et Physiologie Moléculaire des Plantes, CNRS/INRA/SupAgro/UM2, 2 place Viala, 34060, Montpellier cedex, France. atf@life.ku.dk.
Doan-Trung LuuBiochimie et Physiologie Moléculaire des Plantes, CNRS/INRA/SupAgro/UM2, 2 place Viala, 34060, Montpellier cedex, France. luu@supagro.inra.fr.
Hervé SentenacBiochimie et Physiologie Moléculaire des Plantes, CNRS/INRA/SupAgro/UM2, 2 place Viala, 34060, Montpellier cedex, France. sentenac@supagro.inra.fr.
Isabelle GaillardBiochimie et Physiologie Moléculaire des Plantes, CNRS/INRA/SupAgro/UM2, 2 place Viala, 34060, Montpellier cedex, France. gaillard@supagro.inra.fr.
Isabelle ChérelBiochimie et Physiologie Moléculaire des Plantes, CNRS/INRA/SupAgro/UM2, 2 place Viala, 34060, Montpellier cedex, France. cherel@supagro.inra.fr.
Institut des Sciences des Plantes de Montpellier · FRCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe plant nuclear pore complex has strongly attracted the attention of the scientific community during the past few years, in particular because of its involvement in hormonal and pathogen/symbiotic signalling. In Arabidopsis thaliana, more than 30 nucleoporins have been identified, but only a few of them have been characterized. Among these, AtNUP160, AtNUP96, AtNUP58, and AtTPR have been reported to modulate auxin signalling, since corresponding mutants are suppressors of the auxin resistance conferred by the axr1 (auxin-resistant) mutation. The present work is focused on AtNUP62, which is essential for embryo and plant development. This protein is one of the three nucleoporins (with AtNUP54 and AtNUP58) of the central channel of the nuclear pore complex.

resultsAtNUP62 promoter activity was detected in many organs, and particularly in the embryo sac, young germinating seedlings and at the adult stage in stipules of cauline leaves. The atnup62-1 mutant, harbouring a T-DNA insertion in intron 5, was identified as a knock-down mutant. It displayed developmental phenotypes that suggested defects in auxin transport or responsiveness. Atnup62 mutant plantlets were found to be hypersensitive to auxin, at the cotyledon and root levels. The phenotype of the AtNUP62-GFP overexpressing line further supported the existence of a link between AtNUP62 and auxin signalling. Furthermore, the atnup62 mutation led to an increase in the activity of the DR5 auxin-responsive promoter, and suppressed the auxin-resistant root growth and leaf serration phenotypes of the axr1 mutant.

conclusionAtNUP62 appears to be a major negative regulator of auxin signalling. Auxin hypersensitivity of the atnup62 mutant, reminding that of atnup58 (and not observed with other nucleoporin mutants), is in agreement with the reported interaction between AtNUP62 and AtNUP58 proteins, and suggests closely related functions. The effect of AtNUP62 on auxin signalling likely occurs in relation to scaffold proteins of the nuclear pore complex (AtNUP160, AtNUP96 and AtTPR).

Indexed as

ArabidopsisArabidopsis ProteinsIndoleacetic AcidsMembrane GlycoproteinsMutagenesis, InsertionalNuclear Pore Complex ProteinsPromoter Regions, GeneticSignal TransductionTransformation, GeneticArabidopsis ProteinsAXR1 protein, ArabidopsisIndoleacetic AcidsMembrane GlycoproteinsNuclear Pore Complex Proteinsnuclear pore protein p62

Identifiers

PMID26728150
PMCPMC4700657
OpenAlexW2223248486

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.