Evidence map›Paper›PMID 26728078›Full record

ArticleVirus genes2016

Molecular characterisation of Porcine rubulavirus (PorPV) isolates from different outbreaks in Mexico.

S Cuevas-Romero, J F Rivera-Benítez, A-L Blomström, M Ramliden, E Hernández-Baumgarten, P Hernández-Jáuregui, H Ramírez-Mendoza, M Berg

Abstract read
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Article in Virus genes, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

S Cuevas-RomeroCentro Nacional de Investigación Disciplinaria en Microbiología Animal, INIFAP, Mexico City, Mexico. cuevas.julieta@inifap.gob.mx.
J F Rivera-BenítezCentro Nacional de Investigación Disciplinaria en Microbiología Animal, INIFAP, Mexico City, Mexico.
A-L BlomströmSection of Virology, Department of Biomedical Sciences and Veterinary Public Health, Swedish University of Agricultural Sciences, Box 7028, 750 07, Uppsala, Sweden.
M RamlidenSection of Virology, Department of Biomedical Sciences and Veterinary Public Health, Swedish University of Agricultural Sciences, Box 7028, 750 07, Uppsala, Sweden.
E Hernández-BaumgartenFacultad de Estudios Superiores Cuautitlán, UNAM, Mexico City, Mexico.
P Hernández-JáureguiCentro de Investigación Biomédica de Oriente, IMSS, Metepec, Puebla, Mexico.
H Ramírez-MendozaDepartamento de Microbiología e Inmunología, Facultad de Medicina Veterinaria y Zootecnia, UNAM, Mexico City, Mexico.
M BergSection of Virology, Department of Biomedical Sciences and Veterinary Public Health, Swedish University of Agricultural Sciences, Box 7028, 750 07, Uppsala, Sweden.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Since the report of the initial outbreak of Porcine rubulavirus (PorPV) infection in pigs, only one full-length genome from 1984 (PorPV-LPMV/1984) has been characterised. To investigate the overall genetic variation, full-length gene nucleotide sequences of current PorPV isolates were obtained from different clinical cases of infected swine. Genome organisation and sequence analysis of the encoded proteins (NP, P, F, M, HN and L) revealed high sequence conservation of the NP protein and the expression of the P and V proteins in all PorPV isolates. The V protein of one isolate displayed a mutation that has been implicated to antagonise the antiviral immune responses of the host. The M protein indicated a variation in a short region that could affect the electrostatic charge and the interaction with the membrane. One PorPV isolate recovered from the lungs showed a mutation at the cleavage site (HRKKR) of the F protein that could represent an important factor to determine the tissue tropism and pathogenicity of this virus. The HN protein showed high sequence identity through the years (up to 2013). Additionally, a number of sequence motifs of very high amino acid conservation among the PorPV isolates important for polymerase activity of the L protein have been identified. In summary, genetic comparisons and phylogenetic analyses indicated that three different genetic variants of PorPV are currently spreading within the swine population, and a new generation of circulating virus with different characteristics has begun to emerge.

Indexed as

AnimalsDisease OutbreaksDNA, ComplementaryGenes, ViralGenetic VariationMexicoPhylogenyRNA, ViralRubulavirusRubulavirus InfectionsSequence Analysis, RNASwineSwine DiseasesViral ProteinsDNA, ComplementaryRNA, ViralViral ProteinsEpidemiologyGenetic variantsPorcine rubulavirus

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.