Evidence map›Paper›PMID 26727004›Full record

ArticlePloS one2016

Characterization of Fluorescent Proteins for Three- and Four-Color Live-Cell Imaging in S. cerevisiae.

Ryo Higuchi-Sanabria, Enrique J Garcia, Delia Tomoiaga, Emilia L Munteanu, Paul Feinstein, Liza A Pon

Abstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Shining a light on the impact of antifungals onAntimicrobial agents and chemotherapy · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Imaging the Actin Cytoskeleton in Live Budding Yeast Cells.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. FRET Microscopy in Yeast.Biosensors · 2019
    Review
  16. Imaging and analysis of genetically encoded calcium indicators linking neural circuits and behaviors.The Korean journal of physiology & pharmacology : official journal of the Korean Physiological Society and the Korean Society of Pharmacology · 2019
    Review
  17. Analysis of the roles of phosphatidylinositol-4,5-Molecular biology of the cell · 2019
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ryo Higuchi-SanabriaDepartment of Pathology and Cell Biology, Columbia University, New York, NY, United States of America.
Enrique J GarciaDepartment of Pathology and Cell Biology, Columbia University, New York, NY, United States of America.
Delia TomoiagaDepartment of Biological Sciences, Hunter College and The Graduate Center Biochemistry, Biology and Biopsychology and Behavioral Neuroscience Programs, CUNY, New York, NY 10065, United States of America.
Emilia L MunteanuHerbert Irving Comprehensive Cancer Center, Columbia University, New York, NY, United States of America.
Paul FeinsteinDepartment of Biological Sciences, Hunter College and The Graduate Center Biochemistry, Biology and Biopsychology and Behavioral Neuroscience Programs, CUNY, New York, NY 10065, United States of America.
Liza A PonDepartment of Pathology and Cell Biology, Columbia University, New York, NY, United States of America.

Funding

Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Parisa Tehranifar · 1985 to 2026
$115.3M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007367 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI REINER, STEVEN L · 1985 to 2021
$25.1M
Basic and Translational Research Center for Reducing Health DisparitiesG12MD007599 · NIMHD · HUNTER COLLEGE · PI ANGULO, JESUS A · 2012 to 2017
$14.6M
NUTRITIONT32DK007647 · NIDDK · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Anthony W Ferrante, Lori M Zeltser · 1990 to 2026
$7.4M
Mitochondrial inheritance and quality controlR35GM122589 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Liza A Pon · 2017 to 2026
$5.1M
MITOCHONDRIAL MOTILITY AND INHERITANCER01GM045735 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PON, LIZA A · 1993 to 2016
$4.2M
Regulation of Odorant Receptor Gene ExpressionSC1GM088114 · NIGMS · HUNTER COLLEGE · PI FEINSTEIN, PAUL · 2010 to 2014
$1.6M
Mitochondrial-cytoskeletal interactions and agingR01GM096445 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI PON, LIZA A · 2011 to 2014
$1.3M
NCI NIH HHS 5 P30 CA13696NCI NIH HHS P30 CA013696NIDDK NIH HHS 5 T32 DK7647NIDDK NIH HHS T32 DK007647NIGMS NIH HHS 1 R01 GM096445NIGMS NIH HHS 3 R01 GM45735NIGMS NIH HHS 5 T32 GM007367NIGMS NIH HHS R01 GM045735NIGMS NIH HHS R01 GM096445NIGMS NIH HHS R35 GM122589NIGMS NIH HHS SC1 GM088114NIGMS NIH HHS T32 GM007367NIMHD NIH HHS G12 MD007599NIMHD NIH HHS MD007599
6 · The paper itself

Abstract

Saccharomyces cerevisiae are widely used for imaging fluorescently tagged protein fusions. Fluorescent proteins can easily be inserted into yeast genes at their chromosomal locus, by homologous recombination, for expression of tagged proteins at endogenous levels. This is especially useful for incorporation of multiple fluorescent protein fusions into a single strain, which can be challenging in organisms where genetic manipulation is more complex. However, the availability of optimal fluorescent protein combinations for 3-color imaging is limited. Here, we have characterized a combination of fluorescent proteins, mTFP1/mCitrine/mCherry for multicolor live cell imaging in S. cerevisiae. This combination can be used with conventional blue dyes, such as DAPI, for potential four-color live cell imaging.

Indexed as

Bacterial ProteinsColoring AgentsDNA, MitochondrialFluorescent DyesGenes, ReporterGenetic VectorsGreen Fluorescent ProteinsIndolesLuminescent ProteinsOptical ImagingPlasmidsRecombinant ProteinsRed Fluorescent ProteinSaccharomyces cerevisiaeSingle-Cell AnalysisSubcellular FractionsBacterial Proteinscitrine protein, bacteriaColoring AgentsCyan Fluorescent ProteinDAPIDNA, MitochondrialFluorescent DyesGreen Fluorescent ProteinsIndolesLuminescent ProteinsRecombinant ProteinsRed Fluorescent Protein

Identifiers

PMID26727004
PMCPMC4699809

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.