Evidence map›Paper›PMID 26722453›Full record

ArticleInternational journal of clinical and experimental pathology2015

Proteomics and bioinformatics analysis of mouse hypothalamic neurogenesis with or without EPHX2 gene deletion.

Lijun Zhong, Juntuo Zhou, Dawei Wang, Xiajuan Zou, Yaxin Lou, Dan Liu, Bin Yang, Yi Zhu, Xiaoxia Li

Open access · greenAbstract read
In one paragraph

Article in International journal of clinical and experimental pathology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Lijun ZhongMedical and Health Analytical Center, Peking University Health Science Center Beijing 100191, China.
Juntuo ZhouDepartment of Pathology, Peking University Health Science Center Beijing 100191, China.
Dawei WangInstitute of Cardiovascular Science, Peking University Health Science Center Beijing 100191, China.
Xiajuan ZouMedical and Health Analytical Center, Peking University Health Science Center Beijing 100191, China.
Yaxin LouMedical and Health Analytical Center, Peking University Health Science Center Beijing 100191, China.
Dan LiuMedical and Health Analytical Center, Peking University Health Science Center Beijing 100191, China.
Bin YangMedical and Health Analytical Center, Peking University Health Science Center Beijing 100191, China.
Yi ZhuDepartment of Physiology and Pathophysiology, Peking University Health Science Center Beijing 100191, China.
Xiaoxia LiDepartment of Physiology and Pathophysiology, Peking University Health Science Center Beijing 100191, China.
Peking University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The aim of this study was to identify differently expressed proteins in the presence and absence of EPHX2 gene in mouse hypothalamus using proteomics profiling and bioinformatics analysis. This study was performed on 3 wild type (WT) and 3 EPHX2 gene global knockout (KO) mice (EPHX2(-/-)). Using the nano- electrospray ionization (ESI)-LC-MS/MS detector, we identified 31 over-expressed proteins in WT mouse hypothalamus compared to the KO counterparts. Gene Ontology (GO) annotation in terms of the protein-protein interaction network indicated that cellular metabolic process, protein metabolic process, signaling transduction and protein post-translation biological processes involved in EPHX2(-/-) regulatory network. In addition, signaling pathway enrichment analysis also highlighted chronic neurodegenerative diseases and some other signaling pathways, such as TGF-beta signaling pathway, T cell receptor signaling pathway, ErbB signaling pathway, Neurotrophin signaling pathway and MAPK signaling pathway, were strongly coupled with EPHX2 gene knockout. Further studies into the molecular functions of EPHX2 gene in hypothalamus will help to provide new perspective in neurogenesis.

Indexed as

Gene DeletionAnimalsCluster AnalysisComputational BiologyEpoxide HydrolasesHypothalamusMaleMiceMice, Inbred C57BLMice, KnockoutNeurogenesisPrincipal Component AnalysisProtein Interaction MapsProteomicsSignal TransductionSpectrometry, Mass, Electrospray IonizationEphx2 protein, mouseEpoxide HydrolasesEPHX2hypothalamic neurogenesisprotein networkproteomics profiling

Identifiers

PMID26722453
PMCPMC4680398
OpenAlexW2232778843

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.