ArticleBreeding science2015
Genome-wide association mapping focusing on a rice population derived from rice breeding programs in a region.
Article in Breeding science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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Who cites it
24 citing papers in PubMed.
- Genetic architecture of seedling stage chilling tolerance in United States rice germplasm.Frontiers in plant science · 2026Article
- Resistance haplotypes to green rice leafhopper (Breeding science · 2024Article
- Impact of rice GENERAL REGULATORY FACTOR14h (GF14h) on low-temperature seed germination and its application to breeding.PLoS genetics · 2024Article
- Development of SNP genotyping assays for heading date in rice.Breeding science · 2024Article
- Advances and opportunities in unraveling cold-tolerance mechanisms in the world's primary staple food crops.The plant genome · 2024Review
- GWAS analysis reveals the genetic basis of blast resistance associated with heading date in rice.Frontiers in plant science · 2024Article
- Analysis of genome-wide association studies of low-temperature germination in Xian and Geng rice.Frontiers in plant science · 2024Article
- Article
- Article
- Integrative QTL Identification, Fine Mapping and Candidate Gene Analysis of a Major Locus qLTG3a for Seed Low-Temperature Germinability in Rice.Rice (New York, N.Y.) · 2021Article
- Identification of cold tolerance QTLs at the bud burst stage in 211 rice landraces by GWAS.BMC plant biology · 2021Article
- The Candidate Genes Underlying a Stably Expressed QTL for Low Temperature Germinability in Rice (Oryza sativa L.).Rice (New York, N.Y.) · 2020Article
- Article
- Glycosyltransferase OsUGT90A1 helps protect the plasma membrane during chilling stress in rice.Journal of experimental botany · 2020Article
- A novel genotype DATTO5 developed using the five genes exhibits the fastest heading date designed in rice.Breeding science · 2020Article
- Genetic Dissection of Germinability under Low Temperature by Building a Resequencing Linkage Map inInternational journal of molecular sciences · 2020Article
- Characterization of a New qLTG3-1 Allele for Low-temperature Germinability in Rice from the Wild Species Oryza rufipogon.Rice (New York, N.Y.) · 2020Article
- Genome-Wide Association Mapping to Identify Genetic Loci for Cold Tolerance and Cold Recovery During Germination in Rice.Frontiers in genetics · 2020Article
- Establishment of adaptability to the northern-limit of rice production.Molecular genetics and genomics : MGG · 2019Article
- DivergentFrontiers in plant science · 2018Article
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Plant breeding programs in local regions may generate genetic variations that are desirable to local populations and shape adaptability during the establishment of local populations. To elucidate genetic bases for this process, we proposed a new approach for identifying the genetic bases for the traits improved during rice breeding programs; association mapping focusing on a local population. In the present study, we performed association mapping focusing on a local rice population, consisting of 63 varieties, in Hokkaido, the northernmost region of Japan and one of the northern limits of rice cultivation worldwide. Six and seventeen QTLs were identified for heading date and low temperature germinability, respectively. Of these, 13 were novel QTLs in this population and 10 corresponded to the QTLs previously reported based on QTL mapping. The identification of QTLs for traits in local populations including elite varieties may lead to a better understanding of the genetic bases of elite traits. This is of direct relevance for plant breeding programs in local regions.
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