Evidence map›Paper›PMID 26719417›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Understanding TRPV1 activation by ligands: Insights from the binding modes of capsaicin and resiniferatoxin.

Khaled Elokely, Phanindra Velisetty, Lucie Delemotte, Eugene Palovcak, Michael L Klein, Tibor Rohacs, Vincenzo Carnevale

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed, 2 pooled it
8.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed, 2 syntheses or guidelines pooled it, 165 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
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  6. Review
  7. Review
  8. Journal of Zhejiang University. Science. B · 2026
    Review
  9. International journal of molecular sciences · 2026
    Article
  10. Article
  11. Review
  12. Article
  13. Article
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  15. Article
  16. Article
  17. TRPV1: The key bridge in neuroimmune interactions.Journal of intensive medicine · 2024
    Review
  18. Article
  19. Article
  20. Article

31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Khaled ElokelyInstitute for Computational Molecular Science, Temple University, Philadelphia, PA 19122; Department of Chemistry, Temple University, Philadelphia, PA 19122; Department of Pharmaceutical Chemistry, Tanta University, 31527 Tanta, Egypt;
Phanindra VelisettyDepartment of Pharmacology, Physiology and Neuroscience, Rutgers-New Jersey Medical School, Newark, NJ 07103.
Lucie DelemotteInstitute for Computational Molecular Science, Temple University, Philadelphia, PA 19122;
Eugene PalovcakInstitute for Computational Molecular Science, Temple University, Philadelphia, PA 19122;
Michael L KleinInstitute for Computational Molecular Science, Temple University, Philadelphia, PA 19122; Department of Chemistry, Temple University, Philadelphia, PA 19122; mlklein@temple.edu vincenzo.carnevale@temple.edu.
Tibor RohacsDepartment of Pharmacology, Physiology and Neuroscience, Rutgers-New Jersey Medical School, Newark, NJ 07103.
Vincenzo CarnevaleInstitute for Computational Molecular Science, Temple University, Philadelphia, PA 19122; mlklein@temple.edu vincenzo.carnevale@temple.edu.
Temple University · USRutgers, The State University of New Jersey · US

Funding

X-ray and Neutron Interferometry Studies of Anesthetic Interactions with VoltageP01GM055876 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI ECKENHOFF, RODERIC G · 1997 to 2017
$22.4M
Regulation of sensory TRP channels by phospholipids and G-proteinsR01NS055159 · NINDS · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI ROHACS, TIBOR · 2007 to 2022
$5.9M
Regulation of the Intestinal Ca2+ Channels TRPV6R01GM093290 · NIGMS · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI CARNEVALE, VINCENZO, ROHACS, TIBOR · 2011 to 2025
$4.9M
NIGMS NIH HHS P01 GM055876NIGMS NIH HHS P01 GM55876NIGMS NIH HHS R01 GM093290NIGMS NIH HHS R01GM093290NINDS NIH HHS R01 NS055159NINDS NIH HHS R01NS055159
6 · The paper itself

Abstract

The transient receptor potential cation channel subfamily V member 1 (TRPV1) or vanilloid receptor 1 is a nonselective cation channel that is involved in the detection and transduction of nociceptive stimuli. Inflammation and nerve damage result in the up-regulation of TRPV1 transcription, and, therefore, modulators of TRPV1 channels are potentially useful in the treatment of inflammatory and neuropathic pain. Understanding the binding modes of known ligands would significantly contribute to the success of TRPV1 modulator drug design programs. The recent cryo-electron microscopy structure of TRPV1 only provides a coarse characterization of the location of capsaicin (CAPS) and resiniferatoxin (RTX). Herein, we use the information contained in the experimental electron density maps to accurately determine the binding mode of CAPS and RTX and experimentally validate the computational results by mutagenesis. On the basis of these results, we perform a detailed analysis of TRPV1-ligand interactions, characterizing the protein ligand contacts and the role of individual water molecules. Importantly, our results provide a rational explanation and suggestion of TRPV1 ligand modifications that should improve binding affinity.

Indexed as

Ion Channel GatingAmino AcidsBinding SitesCapsaicinCryoelectron MicroscopyDiterpenesElectricityLigandsMolecular Docking SimulationMutagenesisMutant ProteinsStatic ElectricityTRPV Cation ChannelsWaterAmino AcidsCapsaicinDiterpenesLigandsMutant ProteinsresiniferatoxinTRPV Cation ChannelsWaterdockingheat-sensitiveligand-gatednociceptionvanilloid

Identifiers

PMID26719417
PMCPMC4720335
OpenAlexW2212776737

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.