Evidence map›Paper›PMID 26715306›Full record

ArticleParasites & vectors2015

Analysis of the mitochondrial maxicircle of Trypanosoma lewisi, a neglected human pathogen.

Ruo-Hong Lin, De-Hua Lai, Ling-Ling Zheng, Jie Wu, Julius Lukeš, Geoff Hide, Zhao-Rong Lun

Erratum issuedAbstract read
In one paragraph

Article in Parasites & vectors, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Mitochondrial DNA Structure inPathogens (Basel, Switzerland) · 2025
    Review
  3. Article
  4. Transboundary and emerging diseases · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Mitochondrial RNA editing inComputational and structural biotechnology journal · 2022
    Article
  11. Article
  12. Review
  13. Infection withParasitology · 2021
    Article
  14. Guide RNA Repertoires in the Main Lineages ofFrontiers in cellular and infection microbiology · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Genes · 2019
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Ruo-Hong LinCenter for Parasitic Organisms, State Key Laboratory of Biocontrol, School of Life Sciences and Key Laboratory of Tropical Diseases and Control of the Ministry of Education, Zhongshan School of Medicine, Sun Yat-Sen University, Guangzhou, The People's Republic of China. linruohong6@163.com.
De-Hua LaiCenter for Parasitic Organisms, State Key Laboratory of Biocontrol, School of Life Sciences and Key Laboratory of Tropical Diseases and Control of the Ministry of Education, Zhongshan School of Medicine, Sun Yat-Sen University, Guangzhou, The People's Republic of China. laidehua@mail.sysu.edu.cn.
Ling-Ling ZhengKey Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, The People's Republic of China. zhengll33@mail.sysu.edu.cn.
Jie WuKey Laboratory of Gene Engineering of the Ministry of Education, State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, The People's Republic of China. jasonwufree2012@gmail.com.
Julius LukešInstitute of Parasitology, Biology Centre, Czech Academy of Sciences and Faculty of Science, University of South Bohemia, České Budějovice (Budweis), Czech Republic. jula@paru.cas.cz.
Geoff HideEcosystems and Environment Research Centre and Biomedical Research Centre, School of Environment and Life Sciences, University of Salford, Salford, UK. g.hide@salford.ac.uk.
Zhao-Rong LunCenter for Parasitic Organisms, State Key Laboratory of Biocontrol, School of Life Sciences and Key Laboratory of Tropical Diseases and Control of the Ministry of Education, Zhongshan School of Medicine, Sun Yat-Sen University, Guangzhou, The People's Republic of China. lsslzr@mail.sysu.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe haemoflagellate Trypanosoma lewisi is a kinetoplastid parasite which, as it has been recently reported to cause human disease, deserves increased attention. Characteristic features of all kinetoplastid flagellates are a uniquely structured mitochondrial DNA or kinetoplast, comprised of a network of catenated DNA circles, and RNA editing of mitochondrial transcripts. The aim of this study was to describe the kinetoplast DNA of T. lewisi. METHODS/

resultsIn this study, purified kinetoplast DNA from T. lewisi was sequenced using high-throughput sequencing in combination with sequencing of PCR amplicons. This allowed the assembly of the T. lewisi kinetoplast maxicircle DNA, which is a homologue of the mitochondrial genome in other eukaryotes. The assembly of 23,745 bp comprises the non-coding and coding regions. Comparative analysis of the maxicircle sequence of T. lewisi with Trypanosoma cruzi, Trypanosoma rangeli, Trypanosoma brucei and Leishmania tarentolae revealed that it shares 78%, 77%, 74% and 66% sequence identity with these parasites, respectively. The high GC content in at least 9 maxicircle genes of T. lewisi (ATPase6; NADH dehydrogenase subunits ND3, ND7, ND8 and ND9; G-rich regions GR3 and GR4; cytochrome oxidase subunit COIII and ribosomal protein RPS12) implies that their products may be extensively edited. A detailed analysis of the non-coding region revealed that it contains numerous repeat motifs and palindromes.

conclusionsWe have sequenced and comprehensively annotated the kinetoplast maxicircle of T. lewisi. Our analysis reveals that T. lewisi is closely related to T. cruzi and T. brucei, and may share similar RNA editing patterns with them rather than with L. tarentolae. These findings provide novel insight into the biological features of this emerging human pathogen.

Indexed as

Base CompositionCluster AnalysisDNA, KinetoplastDNA, ProtozoanGene OrderHigh-Throughput Nucleotide SequencingMolecular Sequence AnnotationMolecular Sequence DataPhylogenyPolymerase Chain ReactionRNA EditingSequence Analysis, DNASequence Homology, Nucleic AcidTrypanosoma lewisiDNA, KinetoplastDNA, Protozoan

Identifiers

PMID26715306
PMCPMC4696184

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.