Evidence map›Paper›PMID 26714966›Full record

ArticleMicrobial ecology2016

Non-contiguous-Finished Genome Sequence and Description of Paenibacillus camerounensis sp. nov.

Mamadou Bhoye Keita, Roshan Padhmanabhan, Catherine Robert, Eric Delaporte, Didier Raoult, Pierre-Edouard Fournier, Fadi Bittar

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Article in Microbial ecology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Mamadou Bhoye KeitaFaculté de médecine, URMITE, Aix-Marseille Université, Marseille, France.
Roshan PadhmanabhanFaculté de médecine, URMITE, Aix-Marseille Université, Marseille, France.
Catherine RobertFaculté de médecine, URMITE, Aix-Marseille Université, Marseille, France.
Eric DelaporteIRD, University Montpellier 1, Montpellier, France.
Didier RaoultFaculté de médecine, URMITE, Aix-Marseille Université, Marseille, France.
Pierre-Edouard FournierFaculté de médecine, URMITE, Aix-Marseille Université, Marseille, France.
Fadi BittarFaculté de médecine, URMITE, Aix-Marseille Université, Marseille, France. fadi.bittar@univ-amu.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Strain G4(T) was isolated from the stool sample of a wild gorilla (Gorilla gorilla gorilla) from Cameroon. It is a facultative anaerobic, Gram-negative, rod-shaped bacterium. This strain exhibits a 16S rRNA nucleotide sequence similarity of 97.48% with Paenibacillus typhae, the phylogenetically closest species with standing nomenclature. Moreover, the strain G4(T) presents some phenotypic differences when compared to other Paenibacillus species and shows a low MALDI-TOF Mass Spectrometry score that does not allow any identification. Thus, it is likely that this strain represents a new species. Here, we describe the characteristics of this organism, complete genome sequence, and annotation. The 6,933,847 bp size genome (1 chromosome but no plasmid) contains 5972 protein-coding genes and 54 RNAs genes, including 44 tRNA genes. In addition, digital DNA-DNA hybridization values for the genome of the strain G4(T) against the closest Paenibacillus genomes range between 19.7 and 22.1, once again confirming its new status as a new species. On the basis of these polyphasic data, consisting of phenotypic and genomic analyses, we propose the creation of Paenibacillus camerounensis sp. nov. that contains the strain G4(T).

Indexed as

AnimalsBacterial ProteinsBase SequenceCameroonChromosome MappingDNA, BacterialDNA, RibosomalGenes, rRNAGorilla gorillaPaenibacillusPhenotypePhylogenyRNA, Ribosomal, 16SRNA, TransferSequence Analysis, DNASpecies SpecificityBacterial ProteinsDNA, BacterialDNA, RibosomalRNA, Ribosomal, 16SRNA, TransferCulturomicsGenomePaenibacillus camerounensisTaxono-genomics

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.