Evidence map›Paper›PMID 26714111›Full record

ArticleeLife2015

A general strategy to construct small molecule biosensors in eukaryotes.

Justin Feng, Benjamin W Jester, Christine E Tinberg, Daniel J Mandell, Mauricio S Antunes, Raj Chari, Kevin J Morey, Xavier Rios, June I Medford, George M Church and 2 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 172 citations in OpenAlex.

  1. Article
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  6. Buttressing ligand-binding pockets in de novo designed NTF2-like domains.Protein science : a publication of the Protein Society · 2025
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  17. De novo protein design by inversion of the AlphaFold structure prediction network.Protein science : a publication of the Protein Society · 2023
    Article
  18. Article
  19. Review
  20. Article

15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

Justin FengProgram in Biological and Biomedical Sciences, Harvard Medical School, Boston, United States.
Benjamin W JesterDepartment of Genome Sciences, University of Washington, Seattle, United States.
Christine E TinbergDepartment of Biochemistry, University of Washington, Seattle, United States.
Daniel J MandellDepartment of Genetics, Harvard Medical School, Boston, United States.
Mauricio S AntunesDepartment of Biology, Colorado State University, Fort Collins, United States.
Raj ChariDepartment of Genetics, Harvard Medical School, Boston, United States.
Kevin J MoreyDepartment of Biology, Colorado State University, Fort Collins, United States.
Xavier RiosDepartment of Genetics, Harvard Medical School, Boston, United States.
June I MedfordDepartment of Biology, Colorado State University, Fort Collins, United States.
George M ChurchDepartment of Genetics, Harvard Medical School, Boston, United States.
Stanley FieldsDepartment of Genome Sciences, University of Washington, Seattle, United States.
David BakerHoward Hughes Medical Institute, University of Washington, Seattle, United States.
Harvard University · USColorado State University · USSeattle University · USUniversity of Washington · USBoston University · US

Funding

Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2021
$20.7M
NIGMS NIH HHS P41 GM103533NIGMS NIH HHS T32 GM007753
6 · The paper itself

Abstract

Biosensors for small molecules can be used in applications that range from metabolic engineering to orthogonal control of transcription. Here, we produce biosensors based on a ligand-binding domain (LBD) by using a method that, in principle, can be applied to any target molecule. The LBD is fused to either a fluorescent protein or a transcriptional activator and is destabilized by mutation such that the fusion accumulates only in cells containing the target ligand. We illustrate the power of this method by developing biosensors for digoxin and progesterone. Addition of ligand to yeast, mammalian, or plant cells expressing a biosensor activates transcription with a dynamic range of up to ~100-fold. We use the biosensors to improve the biotransformation of pregnenolone to progesterone in yeast and to regulate CRISPR activity in mammalian cells. This work provides a general methodology to develop biosensors for a broad range of molecules in eukaryotes.

Indexed as

EukaryotaBiosensing TechniquesDigoxinMolecular BiologyProgesteroneProtein BindingProtein StabilityRecombinant Fusion ProteinsDigoxinProgesteroneRecombinant Fusion ProteinsbiochemistrybiophysicsbiosensorsCRISPRhuman<i>a. thaliana</i><i>s. cerevisiae</i>metabolic engineeringstructural biology

Identifiers

PMID26714111
PMCPMC4739774
OpenAlexW2209464357

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.