ArticlePloS one2015
Identification and Fine Mapping of a Stably Expressed QTL for Cold Tolerance at the Booting Stage Using an Interconnected Breeding Population in Rice.
Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.
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Who cites it
50 citing papers in PubMed.
- Natural variation in WRKY53 confers cold tolerance at the booting stage between japonica and indica rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- OsMYBAS1 Coordinates ABA/JA Signaling and ROS Homeostasis for Seedling Cold Tolerance of Rice (Oryza sativa L.).Rice (New York, N.Y.) · 2026Article
- The Pentatricopeptide Repeat Protein OsPPR7 Confers Cold Tolerance at the Booting Stage in Rice by Regulating ABA and ROS Homeostasis.Rice (New York, N.Y.) · 2026Article
- Metabolomic response ofGM crops & food · 2025Article
- Natural variation in CTF1 conferring cold tolerance at the flowering stage in rice.Plant biotechnology journal · 2025Article
- Natural variation of indels in the CTB3 promoter confers cold tolerance in japonica rice.Nature communications · 2025Article
- Natural variation of CTB5 confers cold adaptation in plateau japonica rice.Nature communications · 2025Article
- Exploring caffeine as a disruptor of membrane integrity and genomic stability in Staphylococcus aureus: functional and in silico analysis.Archives of microbiology · 2025Article
- Integrated transcriptome and co-expression network analysis revealed the molecular mechanism of cold tolerance in japonica rice at booting stage.Frontiers in plant science · 2025Article
- Article
- QTL detection and candidate gene identification ofMolecular breeding : new strategies in plant improvement · 2024Article
- The Molecular Mechanism of Cold-Stress Tolerance: Cold Responsive Genes and Their Mechanisms in Rice (Biology · 2024Review
- Advances and opportunities in unraveling cold-tolerance mechanisms in the world's primary staple food crops.The plant genome · 2024Review
- Analysis of genome-wide association studies of low-temperature germination in Xian and Geng rice.Frontiers in plant science · 2024Article
- qCTB7 positively regulates cold tolerance at booting stage in rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- QTL and Candidate Genes: Techniques and Advancement in Abiotic Stress Resistance Breeding of Major Cereals.International journal of molecular sciences · 2022Review
- OsMKKK70 Negatively Regulates Cold Tolerance at Booting Stage in Rice.International journal of molecular sciences · 2022Article
- WRKY53 negatively regulates rice cold tolerance at the booting stage by fine-tuning anther gibberellin levels.The Plant cell · 2022Article
- Association analysis of germination level cold stress tolerance and candidate gene identification in Upland cotton (Physiology and molecular biology of plants : an international journal of functional plant biology · 2022Article
- Genomic Regions and Floral Traits Contributing to Low Temperature Tolerance at Young Microspore Stage in a Rice (Frontiers in plant science · 2022Article
Corrections and comments
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Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Cold stress is one of the major abiotic stresses that impede rice production. A interconnected breeding (IB) population consisted of 497 advanced lines developed using HHZ as the recurrent parent and eight diverse elite indica lines as the donors were used to identify stably expressed QTLs for CT at the booting stage. A total of 41,754 high-quality SNPs were obtained through re-sequencing of the IB population. Phenotyping was conducted under field conditions in two years and three locations. Association analysis identified six QTLs for CT on the chromosomes 3, 4 and 12. QTL qCT-3-2 that showed stable CT across years and locations was fine-mapped to an approximately 192.9 kb region. Our results suggested that GWAS applied to an IB population allows better integration of gene discovery and breeding. QTLs can be mapped in high resolution and quickly utilized in breeding.
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