Evidence map›Paper›PMID 26713541›Full record

ArticleMolecular microbiology2016

Ribosome-associated pentatricopeptide repeat proteins function as translational activators in mitochondria of trypanosomes.

Inna Aphasizheva, Dmitri A Maslov, Yu Qian, Lan Huang, Qi Wang, Catherine E Costello, Ruslan Aphasizhev

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 29 citations in OpenAlex.

  1. Mitochondrial RNA quality control in trypanosomes.Wiley interdisciplinary reviews. RNA · 2021
    Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Mitochondrial transcription in mammalian cells.Frontiers in bioscience (Landmark edition) · 2017
    Review
  14. Article
  15. The Architecture of Trypanosoma brucei editosomes.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  16. Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Inna AphasizhevaDepartment of Molecular and Cell Biology, Boston University Goldman School of Dental Medicine, Boston, MA, 02118, USA.
Dmitri A MaslovDepartment of Biology, University of California, Riverside, CA, 92521, USA.
Yu QianDepartment of Molecular and Cell Biology, Boston University Goldman School of Dental Medicine, Boston, MA, 02118, USA.
Lan HuangDepartment of Physiology and Biophysics, School of Medicine, University of California, Irvine, CA, 92697, USA.
Qi WangDepartment of Biochemistry, Boston University School of Medicine, Boston, MA, 02118, USA.
Catherine E CostelloDepartment of Biochemistry, Boston University School of Medicine, Boston, MA, 02118, USA.
Ruslan AphasizhevDepartment of Molecular and Cell Biology, Boston University Goldman School of Dental Medicine, Boston, MA, 02118, USA.
Boston University · USUniversity of California, Irvine · USUniversity of California, Riverside · US

Funding

Mass Spectrometry Resource for Biology and MedicineP41GM104603 · NIGMS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI COSTELLO, CATHERINE E. · 2012 to 2017
$10.4M
Proteomics of the Proteasome Interacting NetworksR01GM074830 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI HUANG, LAN · 2005 to 2022
$6.1M
Guide RNA Binding ComplexR01AI101057 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI Ruslan Afasizhev · 2012 to 2026
$6.0M
REPEAT-CONTAINING RNA BINDING PROTEINS OF TRYPANOSOMESR01AI113157 · NIAID · BOSTON UNIVERSITY MEDICAL CAMPUS · PI AFASIZHEVA, INNA · 2015 to 2024
$4.6M
Structures and Functions of RNA Editing TUTasesR01AI091914 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI AFASIZHEV, RUSLAN · 2011 to 2020
$4.4M
Mitochondrial ribosomes and related RNP complexes in Trypanosoma bruceiR21AI088292 · NIAID · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI MASLOV, DMITRI · 2010 to 2011
$390k
NIAID NIH HHS AI088292NIAID NIH HHS AI091914NIAID NIH HHS AI113157NIAID NIH HHS R01 AI091914NIAID NIH HHS R01 AI101057NIAID NIH HHS R01 AI113157NIAID NIH HHS R21 AI088292NIGMS NIH HHS GM074830NIGMS NIH HHS P41 GM104603NIGMS NIH HHS R01 GM074830
6 · The paper itself

Abstract

Mitochondrial ribosomes of Trypanosoma brucei are composed of 9S and 12S rRNAs, eubacterial-type ribosomal proteins, polypeptides lacking discernible motifs and approximately 20 pentatricopeptide repeat (PPR) RNA binding proteins. Several PPRs also populate the polyadenylation complex; among these, KPAF1 and KPAF2 function as general mRNA 3' adenylation/uridylation factors. The A/U-tail enables mRNA binding to the small ribosomal subunit and is essential for translation. The presence of A/U-tail also correlates with requirement for translation of certain mRNAs in mammalian and insect parasite stages. Here, we inquired whether additional PPRs activate translation of individual mRNAs. Proteomic analysis identified KRIPP1 and KRIPP8 as components of the small ribosomal subunit in mammalian and insect forms, but also revealed their association with the polyadenylation complex in the latter. RNAi knockdowns demonstrated essential functions of KRIPP1 and KRIPP8 in the actively respiring insect stage, but not in the mammalian stage. In the KRIPP1 knockdown, A/U-tailed mRNA encoding cytochrome c oxidase subunit 1 declined concomitantly with the de novo synthesis of this subunit whereas polyadenylation and translation of cyb mRNA were unaffected. In contrast, the KRIPP8 knockdown inhibited A/U-tailing and translation of both CO1 and cyb mRNAs. Our findings indicate that ribosome-associated PPRs may selectively activate mRNAs for translation.

Indexed as

Activating Transcription FactorsAnimalsMitochondriaMitochondrial ProteinsPolyadenylationProtein BiosynthesisProteomicsProtozoan ProteinsRibosomal ProteinsRibosomesRibosome Subunits, SmallRNA-Binding ProteinsRNA InterferenceRNA, MessengerRNA, ProtozoanRNA, RibosomalActivating Transcription FactorsMitochondrial ProteinsProtozoan ProteinsRibosomal ProteinsRNA-Binding ProteinsRNA, MessengerRNA, ProtozoanRNA, RibosomalRNA, ribosomal, 12S

Identifiers

PMID26713541
PMCPMC4855836
OpenAlexW2286478463

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.