Evidence map›Paper›PMID 26713451›Full record

ArticlePloS one2015

Variants in the ASB10 Gene Are Associated with Primary Open Angle Glaucoma.

Shazia Micheal, Humaira Ayub, Farrah Islam, Sorath Noorani Siddiqui, Wajid Ali Khan, Farah Akhtar, Raheel Qamar, Muhammad Imran Khan, Anneke I den Hollander

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Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Shazia MichealDepartment of Ophthalmology, Radboud University Nijmegen Medical Centre, Nijmegen, the Netherlands.
Humaira AyubDepartment of Ophthalmology, Radboud University Nijmegen Medical Centre, Nijmegen, the Netherlands.
Farrah IslamAl-Shifa Eye Trust Hospital Jhelum Road, Rawalpindi, 46000, Pakistan.
Sorath Noorani SiddiquiAl-Shifa Eye Trust Hospital Jhelum Road, Rawalpindi, 46000, Pakistan.
Wajid Ali KhanAl-Shifa Eye Trust Hospital Jhelum Road, Rawalpindi, 46000, Pakistan.
Farah AkhtarAl-Shifa Eye Trust Hospital Jhelum Road, Rawalpindi, 46000, Pakistan.
Raheel QamarDepartment of Biosciences, COMSATS Institute of Information Technology, Islamabad, Pakistan.
Muhammad Imran KhanDepartment of Human Genetics, Radboud University Nijmegen Medical Centre, Nijmegen, the Netherlands.
Anneke I den HollanderDepartment of Ophthalmology, Radboud University Nijmegen Medical Centre, Nijmegen, the Netherlands.
Radboud University Medical Center · NLRadboud University Nijmegen · NLIsra University · PK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRecently nonsynonymous coding variants in the ankyrin repeats and suppressor of cytokine signaling box-containing protein 10 (ASB10) gene were found to be associated with primary open angle glaucoma (POAG) in cohorts from Oregon and Germany, but this finding was not confirmed in an independent cohort from Iowa. The aim of the current study was to assess the role of ASB10 gene variants in Pakistani glaucoma patients.

methodsSanger sequencing of the coding exons and splice junctions of the ASB10 gene was performed in 30 probands of multiplex POAG families, 208 sporadic POAG patients and 151 healthy controls from Pakistan. Genotypic associations of individual variants with POAG were analyzed with the Fisher's exact or Chi-square test.

resultsIn total 24 variants were identified in POAG probands and sporadic patients, including 11 novel variants and 13 known variants. 13 of the variants were nonsynonymous, 6 were synonymous, and 5 were intronic. Three nonsynonymous variants (p.Arg49Cys, p.Arg237Gly, p.Arg453Cys) identified in the probands were not segregating in the respective families. This is not surprising since glaucoma is a multifactorial disease, and multiple factors are likely to be involved in the disease manifestation in these families. However a nonsynonymous variant, p.Arg453Cys (rs3800791), was found in 6 sporadic POAG patients but not in controls, suggesting that it infers increased risk for the disease. In addition, one synonymous variant was found to be associated with sporadic POAG: p.Ala290Ala and the association of the variant with POAG remained significant after correction for multiple testing (uncorrected p-value 0.002, corrected p-value 0.047). The cumulative burden of rare, nonsynonymous variants was significantly higher in sporadic POAG patients compared to control individuals (p-value 0.000006).

conclusionsVariants in ASB10 were found to be significantly associated with sporadic POAG in the Pakistani population. This supports previous findings that sequence variants in the ASB10 gene may act as a risk factor for glaucoma.

Indexed as

Genetic VariationAdolescentAdultAmino Acid SequenceAnimalsCohort StudiesFemaleGlaucoma, Open-AngleHumansMaleMiddle AgedMolecular Sequence DataPedigreeSuppressor of Cytokine Signaling ProteinsYoung AdultASB10 protein, humanSuppressor of Cytokine Signaling Proteins

Identifiers

PMID26713451
PMCPMC4695091
OpenAlexW2213044985

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