Evidence map›Paper›PMID 26712937›Full record

ArticleJournal of bacteriology2015

Permuting the PGF Signature Motif Blocks both Archaeosortase-Dependent C-Terminal Cleavage and Prenyl Lipid Attachment for the Haloferax volcanii S-Layer Glycoprotein.

Mohd Farid Abdul Halim, Kelly R Karch, Yitian Zhou, Daniel H Haft, Benjamin A Garcia, Mechthild Pohlschroder

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
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  8. Halofilins as emerging bactofilin families of archaeal cell shape plasticity orchestrators.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Viruses · 2022
    Article
  13. Review
  14. Article
  15. Review
  16. Improved growth and morphological plasticity ofMicrobiology (Reading, England) · 2021
    Article
  17. Article
  18. Article
  19. Article
  20. Limited Cross-Complementation BetweenFrontiers in microbiology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Mohd Farid Abdul HalimUniversity of Pennsylvania, Department of Biology, Philadelphia, Pennsylvania, USA.
Kelly R KarchUniversity of Pennsylvania, Perelman School of Medicine, Department of Biochemistry and Molecular Biophysics, Penn Medicine Epigenetics Program, Philadelphia, Pennsylvania, USA.
Yitian ZhouUniversity of Pennsylvania, Department of Biology, Philadelphia, Pennsylvania, USA.
Daniel H HaftNational Center for Biotechnology Information, NIH, Bethesda, Maryland, USA.
Benjamin A GarciaUniversity of Pennsylvania, Perelman School of Medicine, Department of Biochemistry and Molecular Biophysics, Penn Medicine Epigenetics Program, Philadelphia, Pennsylvania, USA.
Mechthild PohlschroderUniversity of Pennsylvania, Department of Biology, Philadelphia, Pennsylvania, USA pohlschr@sas.upenn.edu.
University of Pennsylvania · USNational Center for Biotechnology Information · USUniversity of Pennsylvania Health System · US

Funding

Predoctoral Training at the Chemistry-Biology InterfaceT32GM071339 · NIGMS · WISTAR INSTITUTE · PI MARMORSTEIN, RONEN, SPEICHER, DAVID W. · 2005 to 2019
$3.2M
NIGMS NIH HHS T32 GM071339
6 · The paper itself

Abstract

unlabelledFor years, the S-layer glycoprotein (SLG), the sole component of many archaeal cell walls, was thought to be anchored to the cell surface by a C-terminal transmembrane segment. Recently, however, we demonstrated that the Haloferax volcanii SLG C terminus is removed by an archaeosortase (ArtA), a novel peptidase. SLG, which was previously shown to be lipid modified, contains a C-terminal tripartite structure, including a highly conserved proline-glycine-phenylalanine (PGF) motif. Here, we demonstrate that ArtA does not process an SLG variant where the PGF motif is replaced with a PFG motif (slg(G796F,F797G)). Furthermore, using radiolabeling, we show that SLG lipid modification requires the PGF motif and is ArtA dependent, lending confirmation to the use of a novel C-terminal lipid-mediated protein-anchoring mechanism by prokaryotes. Similar to the case for the ΔartA strain, the growth, cellular morphology, and cell wall of the slg(G796F,F797G) strain, in which modifications of additional H. volcanii ArtA substrates should not be altered, are adversely affected, demonstrating the importance of these posttranslational SLG modifications. Our data suggest that ArtA is either directly or indirectly involved in a novel proteolysis-coupled, covalent lipid-mediated anchoring mechanism. Given that archaeosortase homologs are encoded by a broad range of prokaryotes, it is likely that this anchoring mechanism is widely conserved. IMPORTANCE: Prokaryotic proteins bound to cell surfaces through intercalation, covalent attachment, or protein-protein interactions play critical roles in essential cellular processes. Unfortunately, the molecular mechanisms that anchor proteins to archaeal cell surfaces remain poorly characterized. Here, using the archaeon H. volcanii as a model system, we report the first in vivo studies of a novel protein-anchoring pathway involving lipid modification of a peptidase-processed C terminus. Our findings not only yield important insights into poorly understood aspects of archaeal biology but also have important implications for key bacterial species, including those of the human microbiome. Additionally, insights may facilitate industrial applications, given that photosynthetic cyanobacteria encode uncharacterized homologs of this evolutionarily conserved enzyme, or may spur development of unique drug delivery systems.

Indexed as

Amino Acid MotifsArchaeal ProteinsCell MembraneGene Expression Regulation, ArchaealGene Expression Regulation, EnzymologicGlycineHaloferax volcaniiLipid MetabolismLipidsMembrane GlycoproteinsPeptide HydrolasesPhenylalanineProlineArchaeal ProteinsGlycineLipidsMembrane GlycoproteinsPeptide HydrolasesPhenylalanineProlineS-layer proteins

Identifiers

PMID26712937
PMCPMC4810604
OpenAlexW2277626537

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.