Evidence map›Paper›PMID 26712556›Full record

ArticleApplied and environmental microbiology2015

Visualizing Bdellovibrio bacteriovorus by Using the tdTomato Fluorescent Protein.

Somdatta Mukherjee, Kimberly M Brothers, Robert M Q Shanks, Daniel E Kadouri

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 46 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
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  10. Article
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  16. Quinolone Signals Related toFrontiers in microbiology · 2021
    Article
  17. Article
  18. Xylose-Inducible Promoter Tools forApplied and environmental microbiology · 2020
    Article
  19. Article
  20. Biotechnological Potential ofFrontiers in microbiology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Somdatta MukherjeeDepartment of Oral Biology, Rutgers School of Dental Medicine, Newark, New Jersey, USA.
Kimberly M BrothersDepartment of Ophthalmology, Campbell Laboratory of Ophthalmic Microbiology, Fox Center for Vision Restoration, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Robert M Q ShanksDepartment of Ophthalmology, Campbell Laboratory of Ophthalmic Microbiology, Fox Center for Vision Restoration, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Daniel E KadouriDepartment of Oral Biology, Rutgers School of Dental Medicine, Newark, New Jersey, USA kadourde@sdm.rutgers.edu.
Rutgers, The State University of New Jersey · USUniversity of Pittsburgh · US

Funding

Virus Production and Manipulation of Protein/Gene Expression ModuleP30EY008098 · NEI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Marlene Behrmann · 1989 to 2026
$17.8M
Interdisciplinary Visual Sciences (IVS) Traininig ProgramT32EY017271 · NEI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Marlene Behrmann, Paul R. Kinchington · 2008 to 2026
$3.6M
Novel virulence and exoenzyme regulatorsR01AI085570 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SHANKS, ROBERT M · 2010 to 2014
$1.8M
Impediment of corneal cell migration by a bacterial factorF32EY024785 · NEI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BROTHERS, KIMBERLY M · 2015 to 2016
$112k
NEI NIH HHS EY017271NEI NIH HHS F32 EY024785NEI NIH HHS P30 EY008098NEI NIH HHS P30 EY08098NEI NIH HHS T32 EY017271NIAID NIH HHS AI085570NIAID NIH HHS R01 AI085570
6 · The paper itself

Abstract

Bdellovibrio bacteriovorus is a Gram-negative bacterium that belongs to the delta subgroup of proteobacteria and is characterized by a predatory life cycle. In recent years, work has highlighted the potential use of this predator to control bacteria and biofilms. Traditionally, the reduction in prey cells was used to monitor predation dynamics. In this study, we introduced pMQ414, a plasmid that expresses the tdTomato fluorescent reporter protein, into a host-independent strain and a host-dependent strain of B. bacteriovorus 109J. The new construct was used to conveniently monitor predator proliferation in real time, in different growth conditions, in the presence of lytic enzymes, and on several prey bacteria, replicating previous studies that used plaque analysis to quantify B. bacteriovorus. The new fluorescent plasmid also enabled us to visualize the predator in liquid cultures, in the context of a biofilm, and in association with human epithelial cells.

Indexed as

Genes, ReporterBacterial LoadBdellovibrioEpithelial CellsGene ExpressionHumansLuminescent ProteinsPlasmidsStaining and LabelingLuminescent Proteins

Identifiers

PMID26712556
PMCPMC4784026
OpenAlexW2296741476

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.