Evidence map›Paper›PMID 26712023›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Distance from sub-Saharan Africa predicts mutational load in diverse human genomes.

Brenna M Henn, Laura R Botigué, Stephan Peischl, Isabelle Dupanloup, Mikhail Lipatov, Brian K Maples, Alicia R Martin, Shaila Musharoff, Howard Cann, Michael P Snyder and 3 more

Abstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 141 papers.

0numbers the graph read from it
0cells of the map it votes in
141citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

141 citing papers in PubMed.

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  4. Integrating 730,947 exome sequences with clinical literature improves gene discovery.medRxiv : the preprint server for health sciences · 2026
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81 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Brenna M HennDepartment of Ecology and Evolution, Stony Brook University, The State University of New York, Stony Brook, NY 11794; brenna.henn@stonybrook.edu cdbustam@stanford.edu.
Laura R BotiguéDepartment of Ecology and Evolution, Stony Brook University, The State University of New York, Stony Brook, NY 11794;
Stephan PeischlInstitute of Ecology and Evolution, University of Berne, 3012 Berne, Switzerland; Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland; Interfaculty Bioinformatics Unit, University of Berne, 3012 Berne, Switzerland;
Isabelle DupanloupInstitute of Ecology and Evolution, University of Berne, 3012 Berne, Switzerland;
Mikhail LipatovDepartment of Ecology and Evolution, Stony Brook University, The State University of New York, Stony Brook, NY 11794;
Brian K MaplesDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305;
Alicia R MartinDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305;
Shaila MusharoffDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305;
Howard CannCentre d'Etude du Polymorphisme Humain, Foundation Jean Dausset, 75010 Paris, France;
Michael P SnyderDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305;
Laurent ExcoffierInstitute of Ecology and Evolution, University of Berne, 3012 Berne, Switzerland; Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland;
Jeffrey M KiddDepartment of Human Genetics and Department of Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, MI 48109.
Carlos D BustamanteDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305; brenna.henn@stonybrook.edu cdbustam@stanford.edu.

Funding

INSTITUTIONAL TRAINING GRANT IN GENOME SCIENCET32HG000044 · NHGRI · STANFORD UNIVERSITY · PI MICHAEL P. SNYDER · 1995 to 2026
$32.2M
GENETICS TRAINING PROGRAM FOR PHD CANDIDATEST32GM007790 · NIGMS · STANFORD UNIVERSITY · PI BRUNET, ANNE, KINGSLEY, DAVID M · 1985 to 2020
$12.8M
Population Genetic Inferences From Dense Genotype DataR01HG003229 · NHGRI · CORNELL UNIVERSITY ITHACA · PI BUSTAMANTE, CARLOS DANIEL, CLARK, ANDREW G · 2004 to 2013
$4.8M
Characterizing the Global Architecture of Genomic DiversityDP5OD009154 · OD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KIDD, JEFFREY M · 2011 to 2015
$1.9M
NHGRI NIH HHS 3R01HG003229NHGRI NIH HHS R01 HG003229NHGRI NIH HHS T32 HG000044NIGMS NIH HHS T32 GM007790NIH HHS DP5 OD009154NIH HHS DP5OD009154
6 · The paper itself

Abstract

The Out-of-Africa (OOA) dispersal ∼ 50,000 y ago is characterized by a series of founder events as modern humans expanded into multiple continents. Population genetics theory predicts an increase of mutational load in populations undergoing serial founder effects during range expansions. To test this hypothesis, we have sequenced full genomes and high-coverage exomes from seven geographically divergent human populations from Namibia, Congo, Algeria, Pakistan, Cambodia, Siberia, and Mexico. We find that individual genomes vary modestly in the overall number of predicted deleterious alleles. We show via spatially explicit simulations that the observed distribution of deleterious allele frequencies is consistent with the OOA dispersal, particularly under a model where deleterious mutations are recessive. We conclude that there is a strong signal of purifying selection at conserved genomic positions within Africa, but that many predicted deleterious mutations have evolved as if they were neutral during the expansion out of Africa. Under a model where selection is inversely related to dominance, we show that OOA populations are likely to have a higher mutation load due to increased allele frequencies of nearly neutral variants that are recessive or partially recessive.

Indexed as

Genome, HumanHuman MigrationMutationAfrica South of the SaharaAllelesAnimalsAsian PeopleBlack PeopleComputer SimulationConserved SequenceEthnicityEvolution, MolecularFounder EffectGene FlowGenetic Diseases, InbornGenetic Driftexpansion loadfounder effectmutationpurifying selectionrange expansion

Identifiers

PMID26712023
PMCPMC4743782

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.